Ludwigia yellow vein Vietnam virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAAATTTTTCCCCCCTTTCACTTTAGTGGGTCCCCCGCACTATTTTTGGTCGGCCAATGAGAATACGCGCTCAAAGCTTAGATAACCGTGTGGTCCCGCCATAAATAACTTCCCCTCGAAGGTAAATTCAAAATGTGGGATCCGTTGGAGCACGAGTTTCCGGAAACTCTTCACGGTTTCCGTTGTATGCTCGCTATCAAATACCTGCAGACTGTAGCGGATACGTATGCTCCGGATACGGTAGGTTACGATCTTATTCGTGATTTAATTTCTATTGTACGAGCTGGCAACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACACCCGTCTCCAAAGTACGTCGCCGGTTGAACTTCGATTCCCCCGGAGTGAGCCGTGTTGCTGCCCGCACTGTCCTCGGCATAACCCGAAAGAATGCCTGGACGTACAGGCCCACGTATCGCAAGCCCAGACTGTACAGAATGTACAGAAGCCCTGATGTCCCTCGTGGTTGTGAGGGTCCATGTAAGGTTCAGTCGTTCGAGAAGAAACATGATGTTGGTCATACTGGTACATTATTATGTGTGTCCGATGTTACTCGTGGAAATGGGTTAACCCATCGCACTGGGAAGAGGTTCTGTATTAAGTCTATTTACATTCTGGGTAAGTTATGGATGGATGAGAACATCAAGACGAAGAATCACACGAACACAGTCATGTTCTGGTTAGTTAGGGATAGGCGTCCTGTCACAACGCCATATGGGTTCGGCGAGGCATTCAACATGTACGACAATGAGCCCAGTACAGCAACTATCAAGAACGATCTTCGTGACCGTCTGCAGGTGCTGCACAGGTTTCAAGCCACTCTCACAGGAGGTCAGTACGCGTGCAAGGAGCAGGTAATGGTGAAGAGGTTCTGGAAGATCAACAATCACGTCGTCTACAACCATCAGGAGAAGGCTGCTTACGAGAATCACACTGAGAACGCATTAATATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACACTGAAGATCCGCATCTACTTCTATGATTCAGTCCAGAATTAATAAAGATTATATTTTATTATGTGTGTCAATTGAGCATCAATTGTGCCCTCCAGTACATCGTACAATACATGAGTTATAGCCCTAATTACATTGTTGATACTAATAATGCCTAAGTTATCTAAATACTTCATACATTGAACATTAAATACTCTTAAGAAACGCCCAGTCTGAGGACGTAAACGAGTCCAGATCTGGCAGATCAGGAAACACTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGGACTTGGATTGTTATTACGTCGTGATCCCTCAGGAATGGCCTCACCAGGTGCTTGGTAATCTTGAAATAGAGGGGATTTCTGACCGTCCAGGTATAGACGCCACTCTCTGCCTGAGTTGCAGTGATGTATTCCCCGGTGCGAAAATCCATGGTTGGCACAGGTAATTGGAAAGAAGTATGAGCAGCCGCACGGTAGATCAACTCTCCTCCGGCGTATTGACTTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAGTGGCTCTGAGAGGAAGACGAATTCTGCATTCTTCAGTGCCCAGGACTTTAGAGCTGAATTCTTATCCTCGTCCAGATACTCCTTATATGATGATGTTGGGCCAGGATTGCATAGAAAGATTGTCGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTGGTATTGCTTTGCCAATCCCTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAATGGGGGTCCACATCATCGATGACGTTATACCATGCGTCATTAGAGTAGATCTTGGGGCTCAAGTCTAGATGCCCACAAAGGTAATTATGTGGGCCCAATGATCTGGCCCACATTGTCTTCCCAGTTCTACTCTCTCCTTCTACCACTATACTCACCGGTCGCCAAGGCCGCGCAGCGGCATCCCTGACGTTCTCCTCCGCCCAACATTCAAGTTCTTCCGGAACTCGATCGAATGAAGAAGCTAAAAAAGGAGAAACAAAAACCTCTACTGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAACTCCTTAATTACATTAAGAGCCTCTGACTTACTGCCGCTGTTAAGCGCCTGGGCGTAAGCGTCATTGGCTGTCTGTTGTCCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTCTCCAGGTAGGACTTGACATCTGAACTCGATTTAGCCCCCTGTAAGTTCGGATGGAAATGTGCGCTCCTACTTGGGGATACCAGGTCGAAGAATCGTGGATTCGTGCAGTTGTACTTCCCTTCGAACTGCACGAGCACATGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATCTTGATGTATTTCTTGTTGGTCGGAGTGTTTAGGGCTTGCAATTGGGAAAGTGCTTCTTCTTTGGAGAGAGAGCAGTGTGGATAAGTGAGGAAATAGTTCTTGGCTTTAATAGAAAATCTGCCGGCTCTTGGCATTTTGGAATCGGGGGGCACTCAAAGTCCTGTGCAATTGGGGGAACGGGGGGACAATTTATATGTGCCCCCCTAATGGCATTCTTGAAATTTCCTTTGCAATTTCAAATTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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YP_009506431.1
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Location
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147-497 |
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Gene Name
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AV2 |
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Protein Name
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AV2 protein |
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Coding Region
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ATGTGGGATCCGTTGGAGCACGAGTTTCCGGAAACTCTTCACGGTTTCCGTTGTATGCTCGCTATCAAATACCTGCAGACTGTAGCGGATACGTATGCTCCGGATACGGTAGGTTACGATCTTATTCGTGATTTAATTTCTATTGTACGAGCTGGCAACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACACCCGTCTCCAAAGTACGTCGCCGGTTGAACTTCGATTCCCCCGGAGTGAGCCGTGTTGCTGCCCGCACTGTCCTCGGCATAACCCGAAAGAATGCCTGGACGTACAGGCCCACGTATCGCAAGCCCAGACTGTACAGAATGTACAGAAGCCCTGA |
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Protein Sequence
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MWDPLEHEFPETLHGFRCMLAIKYLQTVADTYAPDTVGYDLIRDLISIVRAGNYVEATRRYSHFNTRLQSTSPVELRFPRSEPCCCPHCPRHNPKECLDVQAHVSQAQTVQNVQKP |
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NCBI Accession
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YP_009506432.1
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Location
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307-1080 |
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Gene Name
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AV1 |
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Protein Name
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CP protein |
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Coding Region
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ATGTCGAAGCGACCCGCCGATATAGTCATTTCAACACCCGTCTCCAAAGTACGTCGCCGGTTGAACTTCGATTCCCCCGGAGTGAGCCGTGTTGCTGCCCGCACTGTCCTCGGCATAACCCGAAAGAATGCCTGGACGTACAGGCCCACGTATCGCAAGCCCAGACTGTACAGAATGTACAGAAGCCCTGATGTCCCTCGTGGTTGTGAGGGTCCATGTAAGGTTCAGTCGTTCGAGAAGAAACATGATGTTGGTCATACTGGTACATTATTATGTGTGTCCGATGTTACTCGTGGAAATGGGTTAACCCATCGCACTGGGAAGAGGTTCTGTATTAAGTCTATTTACATTCTGGGTAAGTTATGGATGGATGAGAACATCAAGACGAAGAATCACACGAACACAGTCATGTTCTGGTTAGTTAGGGATAGGCGTCCTGTCACAACGCCATATGGGTTCGGCGAGGCATTCAACATGTACGACAATGAGCCCAGTACAGCAACTATCAAGAACGATCTTCGTGACCGTCTGCAGGTGCTGCACAGGTTTCAAGCCACTCTCACAGGAGGTCAGTACGCGTGCAAGGAGCAGGTAATGGTGAAGAGGTTCTGGAAGATCAACAATCACGTCGTCTACAACCATCAGGAGAAGGCTGCTTACGAGAATCACACTGAGAACGCATTAATATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACACTGAAGATCCGCATCTACTTCTATGATTCAGTCCAGAATTAA |
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Protein Sequence
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MSKRPADIVISTPVSKVRRRLNFDSPGVSRVAARTVLGITRKNAWTYRPTYRKPRLYRMYRSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTHRTGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNEPSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKRFWKINNHVVYNHQEKAAYENHTENALILYMACTHASNPVYATLKIRIYFYDSVQN |
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NCBI Accession
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YP_009506433.1
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Location
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1077-1481 |
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Gene Name
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AC3 |
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Protein Name
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REn protein |
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Coding Region
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ATGGATTTTCGCACCGGGGAATACATCACTGCAACTCAGGCAGAGAGTGGCGTCTATACCTGGACGGTCAGAAATCCCCTCTATTTCAAGATTACCAAGCACCTGGTGAGGCCATTCCTGAGGGATCACGACGTAATAACAATCCAAGTCCAGTTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAGTGTTTCCTGATCTGCCAGATCTGGACTCGTTTACGTCCTCAGACTGGGCGTTTCTTAAGAGTATTTAATGTTCAATGTATGAAGTATTTAGATAACTTAGGCATTATTAGTATCAACAATGTAATTAGGGCTATAACTCATGTATTGTACGATGTACTGGAGGGCACAATTGATGCTCAATTGACACACATAATAAAATATAATCTTTATTAA |
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Protein Sequence
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MDFRTGEYITATQAESGVYTWTVRNPLYFKITKHLVRPFLRDHDVITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFLRVFNVQCMKYLDNLGIISINNVIRAITHVLYDVLEGTIDAQLTHIIKYNLY |
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NCBI Accession
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YP_009506434.1
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Location
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1222-1629 |
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Gene Name
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AC2 |
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Protein Name
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TrAP protein |
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Coding Region
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ATGCAGAATTCGTCTTCCTCTCAGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGTCAATACGCCGGAGGAGAGTTGATCTACCGTGCGGCTGCTCATACTTCTTTCCAATTACCTGTGCCAACCATGGATTTTCGCACCGGGGAATACATCACTGCAACTCAGGCAGAGAGTGGCGTCTATACCTGGACGGTCAGAAATCCCCTCTATTTCAAGATTACCAAGCACCTGGTGAGGCCATTCCTGAGGGATCACGACGTAATAACAATCCAAGTCCAGTTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAGTGTTTCCTGATCTGCCAGATCTGGACTCGTTTACGTCCTCAGACTGGGCGTTTCTTAAGAGTATTTAA |
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Protein Sequence
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MQNSSSSQSHCTQVPIKVQHRIAKKKSIRRRRVDLPCGCSYFFPITCANHGFSHRGIHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPEGSRRNNNPSPVQLQPEESTGDAPVFPDLPDLDSFTSSDWAFLKSI |
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NCBI Accession
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YP_009506435.1
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Location
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1529-2617 |
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Gene Name
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AC1 |
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Protein Name
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rep protein |
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Coding Region
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ATGCCAAGAGCCGGCAGATTTTCTATTAAAGCCAAGAACTATTTCCTCACTTATCCACACTGCTCTCTCTCCAAAGAAGAAGCACTTTCCCAATTGCAAGCCCTAAACACTCCGACCAACAAGAAATACATCAAGATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCATGTGCTCGTGCAGTTCGAAGGGAAGTACAACTGCACGAATCCACGATTCTTCGACCTGGTATCCCCAAGTAGGAGCGCACATTTCCATCCGAACTTACAGGGGGCTAAATCGAGTTCAGATGTCAAGTCCTACCTGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAGACAGCCAATGACGCTTACGCCCAGGCGCTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCAGTAGAGGTTTTTGTTTCTCCTTTTTTAGCTTCTTCATTCGATCGAGTTCCGGAAGAACTTGAATGTTGGGCGGAGGAGAACGTCAGGGATGCCGCTGCGCGGCCTTGGCGACCGGTGAGTATAGTGGTAGAAGGAGAGAGTAGAACTGGGAAGACAATGTGGGCCAGATCATTGGGCCCACATAATTACCTTTGTGGGCATCTAGACTTGAGCCCCAAGATCTACTCTAATGACGCATGGTATAACGTCATCGATGATGTGGACCCCCATTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAGAGGGATTGGCAAAGCAATACCAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCGACAATCTTTCTATGCAATCCTGGCCCAACATCATCATATAAGGAGTATCTGGACGAGGATAAGAATTCAGCTCTAAAGTCCTGGGCACTGAAGAATGCAGAATTCGTCTTCCTCTCAGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGTCAATACGCCGGAGGAGAGTTGA |
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Protein Sequence
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MPRAGRFSIKAKNYFLTYPHCSLSKEEALSQLQALNTPTNKKYIKICRELHEDGSPHLHVLVQFEGKYNCTNPRFFDLVSPSRSAHFHPNLQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFHNLNANLDRIFAPPVEVFVSPFLASSFDRVPEELECWAEENVRDAAARPWRPVSIVVEGESRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKSWALKNAEFVFLSEPLYSGTHQSPAQNSQEEVNTPEES |
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NCBI Accession
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YP_009506436.1
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Location
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2170-2460 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGAGCCCTCATCTCCATGTGCTCGTGCAGTTCGAAGGGAAGTACAACTGCACGAATCCACGATTCTTCGACCTGGTATCCCCAAGTAGGAGCGCACATTTCCATCCGAACTTACAGGGGGCTAAATCGAGTTCAGATGTCAAGTCCTACCTGGAGAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAGACAGCCAATGACGCTTACGCCCAGGCGCTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAA |
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Protein Sequence
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MGALISMCSCSSKGSTTARIHDSSTWYPQVGAHISIRTYRGLNRVQMSSPTWRRTETPSIGESFRSTDDLQEGDNRQPMTLTPRRLTAAVSQRLLM |