Lindernia anagallis yellow vein virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000873925.1 |
| Isolate |
Viet Nam: Hanoi |
| Release date |
2015/2/13 |
| Submitter |
Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCCGCCGATTTTTTTAAAGTGGGGCCCCGACCAATGATAATGCGCGCTCATCGCTTATTTAGCTTGTGGTCCCTCTATATAAGACTTACGAAGTAAGTTTCGGGTTAAAGATGTGGGACCCTTTAGAGAACGAGTTTCCTGAAACTGTTCACGGTTTTAGGTGTATGCTTGCCGTAAAATACTTGCAGGCTGTAGAAAATACGTATTCTCCAGATACGAAGGGTGCCGAATTTATACGTAGGTTGATCGTAATTCTTAGGAGTCGTAACTATGTCGAAGCGACCTGCAGATATCGTCATCTCTACTCCGAGCTCGAAGGTACGCCGTCGTCTGAATTTCGACAGCCCGTATGCGAGCCGTGCAGCTGCCCCTACTGTCCTCGTCACAAGCAAAAAGAGGTCATGGGCAAGCAGGCCGATGTACAGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTGCCCAGGGGATGTGAAGGCCCATGTAAGGTACAGTCATTTGAAAAGAGACATGATGTTAGTCATACTGGTACTGGGCTTTGCGTTTCTGATGTTACTAGAGGTACTGGGCTTACTCATCGTACTGGTAAGAGATTTTGCATTAAGTCCGTTTACATATTGGGTAAGATATGGATGGATGAAAACATCAAGACCAAGAACCATACGAACACCGTATTGTTCTGGCTTGTTAGAGATAGAAGGCCCGTCACTACTCCATATGGGTTTGCTGAAGCATTTAACATGTATGATAATGAGCCATCTACTGCGACTATTAAGAATGACCTTCGAGACAGATTACAAGTTTTGCACAAGTTTGGTGTTACGGTTACTGGTGGACAATATGCGTCTAAGGAACAGGCTATGGTGAAGAAATTCTGGAAGATCAACAATCATGTCACGTACAACCACCAAGAGAAGGCTGCTTATGAGAATCACACTGAGAATGCGTTAATTTTGTATATGGCATGTACTCATGCTTCTAATCCCGTGTATGCTACTCTGAAAATCAGAATCTATTTTTATGATTCTGTTAACAATTAATAAATATTGAATTTTATTATATGTCTCTCGGAAACTGAGAGAGTGTTGTTGAATACATCGTACAATACATAATCTACTGCTCTTATTACATCATTAAGTGAAATTACACCTAAATTATTTAAATAACCTAATACATGTCTACTAAATATTCGCAAGAAACGCGAGGTCGGAGCTCGTAAGGGAGTCAAAACCCGAAAGTTGAGGAAGCATTGGTGTATCTCCAATGCTTTCCTCAGGTTGTGGTTGAACCGTATTTGGAAGTGGACTGTGTTGTATGGCCTGAGAAATGGATTCTCCTCGTATTCCGTTATCTTGAAATAGAGGGGATTTGGAACCGTCCAAATAAACGCGCCATTCCTTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCAGAGTCATGGCAGTTGATGGAGAGGTAATAGGTGCACCCGCACGTCAGGTCAATCCTCCGTCGGCGAATTACTTTCTTCTTCGCTGCACGGTGCTGCACTTTGATTGGTACCTGAGTACAATGGCTCCTCGAGGGTGACGAAGGTTGCATTCTTTAAAGCCCAGGCTTTTAATGCGCTGTTCCGCTCTTCGTCTAGGTACTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATGCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAACCACGTTGTACCATGCCTCGTTGCTGTACACCTTGGGGCTCAAGTCAAGGTGCCCACACAAATAATTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCGGTCCTACTATCACCCTCAATAACAATACTAACCGGTCTCCAAGGCCGCGCAGCGGCACCCATGACATTTTCGGACACCCAGCACTCAAGTTCTTCGGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAATATAAACCTCCAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATTGACATGGCCGCCTCTTTAGAACCTGCGTTTAACGCCTCTGCACATGCGTCGTTAGCGTTCTGGCAACCTCCTCTAGCACTTCTTCCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCATCCTTCTCCATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGATCGAAGAATCGGTTATTCGTGCAGACGAATTTCCCTTCGAATTGCACGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTACAGATTTTAATGAATTTTTTATTTGTTGGGGTTTCGATATTCTGTAATTGGGAAAGAGCTTCTTCTTTTGTTAGAGAGCAATGTGGATATGTAAGGAAATAATTTCTGGCTTGTATTTTAAAACGTTTTGGGGGAGCCATTGACTTGGTCAATTGGAGACAATCAAACTTGCGGAATGAATTGGAGACAGGAGACAATATATAGGTGTCTCCAAATGGCATATTGGTAATTATGAATTCTAATTTGAAATTCAAATTTCAAATTGGTAAAGGGCCATCCGCTCTAATATT
Gene Information
|
NCBI Accession
|
YP_001285754.1
|
|
Location
|
120-470 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGACCCTTTAGAGAACGAGTTTCCTGAAACTGTTCACGGTTTTAGGTGTATGCTTGCCGTAAAATACTTGCAGGCTGTAGAAAATACGTATTCTCCAGATACGAAGGGTGCCGAATTTATACGTAGGTTGATCGTAATTCTTAGGAGTCGTAACTATGTCGAAGCGACCTGCAGATATCGTCATCTCTACTCCGAGCTCGAAGGTACGCCGTCGTCTGAATTTCGACAGCCCGTATGCGAGCCGTGCAGCTGCCCCTACTGTCCTCGTCACAAGCAAAAAGAGGTCATGGGCAAGCAGGCCGATGTACAGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLENEFPETVHGFRCMLAVKYLQAVENTYSPDTKGAEFIRRLIVILRSRNYVEATCRYRHLYSELEGTPSSEFRQPVCEPCSCPYCPRHKQKEVMGKQADVQEAQNVQDVQKP |
|
NCBI Accession
|
YP_001285755.1
|
|
Location
|
280-1053 |
|
Gene Name
|
AV1 |
|
Protein Name
|
CP protein |
|
Coding Region
|
ATGTCGAAGCGACCTGCAGATATCGTCATCTCTACTCCGAGCTCGAAGGTACGCCGTCGTCTGAATTTCGACAGCCCGTATGCGAGCCGTGCAGCTGCCCCTACTGTCCTCGTCACAAGCAAAAAGAGGTCATGGGCAAGCAGGCCGATGTACAGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTGCCCAGGGGATGTGAAGGCCCATGTAAGGTACAGTCATTTGAAAAGAGACATGATGTTAGTCATACTGGTACTGGGCTTTGCGTTTCTGATGTTACTAGAGGTACTGGGCTTACTCATCGTACTGGTAAGAGATTTTGCATTAAGTCCGTTTACATATTGGGTAAGATATGGATGGATGAAAACATCAAGACCAAGAACCATACGAACACCGTATTGTTCTGGCTTGTTAGAGATAGAAGGCCCGTCACTACTCCATATGGGTTTGCTGAAGCATTTAACATGTATGATAATGAGCCATCTACTGCGACTATTAAGAATGACCTTCGAGACAGATTACAAGTTTTGCACAAGTTTGGTGTTACGGTTACTGGTGGACAATATGCGTCTAAGGAACAGGCTATGGTGAAGAAATTCTGGAAGATCAACAATCATGTCACGTACAACCACCAAGAGAAGGCTGCTTATGAGAATCACACTGAGAATGCGTTAATTTTGTATATGGCATGTACTCATGCTTCTAATCCCGTGTATGCTACTCTGAAAATCAGAATCTATTTTTATGATTCTGTTAACAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPSSKVRRRLNFDSPYASRAAAPTVLVTSKKRSWASRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFEKRHDVSHTGTGLCVSDVTRGTGLTHRTGKRFCIKSVYILGKIWMDENIKTKNHTNTVLFWLVRDRRPVTTPYGFAEAFNMYDNEPSTATIKNDLRDRLQVLHKFGVTVTGGQYASKEQAMVKKFWKINNHVTYNHQEKAAYENHTENALILYMACTHASNPVYATLKIRIYFYDSVNN |
|
NCBI Accession
|
YP_001285756.1
|
|
Location
|
1050-1460 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn protein |
|
Coding Region
|
ATGACTCTGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAATGGCGCGTTTATTTGGACGGTTCCAAATCCCCTCTATTTCAAGATAACGGAATACGAGGAGAATCCATTTCTCAGGCCATACAACACAGTCCACTTCCAAATACGGTTCAACCACAACCTGAGGAAAGCATTGGAGATACACCAATGCTTCCTCAACTTTCGGGTTTTGACTCCCTTACGAGCTCCGACCTCGCGTTTCTTGCGAATATTTAGTAGACATGTATTAGGTTATTTAAATAATTTAGGTGTAATTTCACTTAATGATGTAATAAGAGCAGTAGATTATGTATTGTACGATGTATTCAACAACACTCTCTCAGTTTCCGAGAGACATATAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MTLDSRTGEPITAAQARNGAFIWTVPNPLYFKITEYEENPFLRPYNTVHFQIRFNHNLRKALEIHQCFLNFRVLTPLRAPTSRFLRIFSRHVLGYLNNLGVISLNDVIRAVDYVLYDVFNNTLSVSERHIIKFNIY |
|
NCBI Accession
|
YP_001285757.1
|
|
Location
|
1195-1602 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP protein |
|
Coding Region
|
ATGCAACCTTCGTCACCCTCGAGGAGCCATTGTACTCAGGTACCAATCAAAGTGCAGCACCGTGCAGCGAAGAAGAAAGTAATTCGCCGACGGAGGATTGACCTGACGTGCGGGTGCACCTATTACCTCTCCATCAACTGCCATGACTCTGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAATGGCGCGTTTATTTGGACGGTTCCAAATCCCCTCTATTTCAAGATAACGGAATACGAGGAGAATCCATTTCTCAGGCCATACAACACAGTCCACTTCCAAATACGGTTCAACCACAACCTGAGGAAAGCATTGGAGATACACCAATGCTTCCTCAACTTTCGGGTTTTGACTCCCTTACGAGCTCCGACCTCGCGTTTCTTGCGAATATTTAG |
|
Protein Sequence
|
MQPSSPSRSHCTQVPIKVQHRAAKKKVIRRRRIDLTCGCTYYLSINCHDSGFTHRGTHHCSSSKEWRVYLDGSKSPLFQDNGIRGESISQAIQHSPLPNTVQPQPEESIGDTPMLPQLSGFDSLTSSDLAFLANI |
|
NCBI Accession
|
YP_001285758.1
|
|
Location
|
1502-2590 |
|
Gene Name
|
AC1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGGCTCCCCCAAAACGTTTTAAAATACAAGCCAGAAATTATTTCCTTACATATCCACATTGCTCTCTAACAAAAGAAGAAGCTCTTTCCCAATTACAGAATATCGAAACCCCAACAAATAAAAAATTCATTAAAATCTGTAGAGAACTACACGAAGATGGGAGCCCTCATCTCCATGTGCTCGTGCAATTCGAAGGGAAATTCGTCTGCACGAATAACCGATTCTTCGATCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGAACGCTAACGACGCATGTGCAGAGGCGTTAAACGCAGGTTCTAAAGAGGCGGCCATGTCAATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTGGAGGTTTATATTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCCGAAGAACTTGAGTGCTGGGTGTCCGAAAATGTCATGGGTGCCGCTGCGCGGCCTTGGAGACCGGTTAGTATTGTTATTGAGGGTGATAGTAGGACCGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAATTATTTGTGTGGGCACCTTGACTTGAGCCCCAAGGTGTACAGCAACGAGGCATGGTACAACGTGGTTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGTGGCATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACGTCATCATATAAAGAGTACCTAGACGAAGAGCGGAACAGCGCATTAAAAGCCTGGGCTTTAAAGAATGCAACCTTCGTCACCCTCGAGGAGCCATTGTACTCAGGTACCAATCAAAGTGCAGCACCGTGCAGCGAAGAAGAAAGTAATTCGCCGACGGAGGATTGA |
|
Protein Sequence
|
MAPPKRFKIQARNYFLTYPHCSLTKEEALSQLQNIETPTNKKFIKICRELHEDGSPHLHVLVQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDTLDWGEFQIDGRSARGGCQNANDACAEALNAGSKEAAMSIIREKLPKDYIFQFHNLNSNLDRIFTPPLEVYISPFSSSSFDQVPEELECWVSENVMGAAARPWRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEERNSALKAWALKNATFVTLEEPLYSGTNQSAAPCSEEESNSPTED |
|
NCBI Accession
|
YP_001285759.1
|
|
Location
|
2176-2433 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCATGTGCTCGTGCAATTCGAAGGGAAATTCGTCTGCACGAATAACCGATTCTTCGATCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATGGAGAAGGATGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGAACGCTAACGACGCATGTGCAGAGGCGTTAA |
|
Protein Sequence
|
MGALISMCSCNSKGNSSARITDSSIWYPQPGQHISIRTFRELNPAPTSSPIWRRMETPSTGENSRSTEEVLEEVARTLTTHVQRR |