Ageratum yellow vein Sri Lanka virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838085.1
Isolate Sri Lanka
Release date 2015/2/12
Submitter Tsai,W.S., Ariyaratne,I., Green,S.K.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_002981
ACCGGATGGCCGCGATTTTTTTTAAAGTGGTCCCCAGAGCACGTGGTCCAATAATAGACGCTCCTTAAAGCTTAATTAATGGCTTGTGGGCCTATATACTTGCCCACCAAGTAGTGGGATTTGTCATCATGTGGGATCCTCTTTTAAACGAGTTCCCCGATACGGTTCACGGATTCCGGTGTATGCTTGCTGTAAAATACTTACAGCTCGTAGAAAATACGTATTCACCTGATTCGTTGGGTTACGATCTAATTCGTGATTTAATCTCAGTTATTAGGGCTAAGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTCAACTTCGAGACCCCGTACACGAGCCGTGTAGCTGTCCCCACTGTCCGCGTCACAAAGTCACGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATATACAGAATGTACAGAAGTCCTGATGTTCCCAGAGGATGCGAAGGCCCATGTAAGGTTCAGTCGTTCGAGTCTAGACATGACATATCCCATATTGGGAAGGTAATGTGTATTAGTGATGTCACCCGTGGAATTGGGCTAACTCATAGGGTCGGTAAGAGGTTTTGTGTTAAGTCCGTATATGTATTGGGCAAGGTGTGGATGGATGAGAGTATCAAAACTAAGAATCACACGAATAGTGTGATGTTTTTTTTGTGTCGTGACAGGAGGCCTGTTGACAAACCCCAGGATTTTGGTGAGGTGTTTAATATGTTTGATAATGAGCCCAGTACTGCAACTGTGAAGAATGTTTTTCGTGATCGCTACCAAGTATTGAGGAAATGGCACGCAACTGTCACTGGTGGAACCTATGCGTCCAAGGAGCAGGCTTTGGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCGTCTACGCACGCCTCTAATCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCTGTATCTAATTAATAAATATTGAATTTTATTGAATGTGATTGTTCAACGTACAAAATGTGATGCAATACATCCCATAAAACATGATCTACTGCTCTAATTACATTGTTTAAACTAATAACCCCTAAACTATCTAAATATTTAAGTGCTTGGTTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGTTGTGAAGTCATCCAGATTCGGAAGATTAGAAAACACTTGTGAATCCCCAATGCCTTCCTCAGGTTGTGATTGAATTGGATCTGCATTGTGATTATGTCGTGATTCTGAAGGAATGCGCGGTTGTGGTGCTCCGTTATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCATTGATGTACTCCCCTGTGCGAGAATCCATGGTTATGACAGGCTAGGGCTATGAAGTATGAGCATCCACAGGGTAGATCAACCCTCCGACGTCTGTTGCTCTTCTTCGCTAACCTGTGTTGGACTTTGATGGGTACCTGAGTAGAGTGGCTCTTCGAGGGTGACGAAGGTCGCATTCTTCAGAGCCCAGTTTTTAAGCGCACTGTTTTTCTCTTCATCCAGATACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATTACTGTACACTTTTGGACTCAGGTCGAGATGACCGCACAAATAATTGTGTGGTCCTAGTGACCTGGCCCACATTGTTTTTCCGGTACGACTATCACCCTCAATTACAATACTAATGGGCCTGATAGGCCGCGCAGCGGCACTGACAACGTTTTCACATGCCCACTCTTCAAGTTCTTCTGGAACTTGGTCGAAAGAAGAAGATAAAAAAGGGGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTTGAATTTAAGTTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCTTTTAATATATTGAGGGCCTGTGCTTTTGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTAACATCACTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTAAGGTCGAAGAATCTATTGTTCCTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGGGGTTTCGAGATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGTGGCTGCCATGTTGACTAAGTCAATCGGTGTCTCTCAATCTTTTCTATGTATCGGTGTATCGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATTTGGTAAAGTGTGCTTTAATTCAAAATCCTCACGCTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_148951.1
Location 129-476
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTCTTTTAAACGAGTTCCCCGATACGGTTCACGGATTCCGGTGTATGCTTGCTGTAAAATACTTACAGCTCGTAGAAAATACGTATTCACCTGATTCGTTGGGTTACGATCTAATTCGTGATTTAATCTCAGTTATTAGGGCTAAGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTCAACTTCGAGACCCCGTACACGAGCCGTGTAGCTGTCCCCACTGTCCGCGTCACAAAGTCACGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATATACAGAATGTACAGAAGTCCTGA
Protein Sequence MWDPLLNEFPDTVHGFRCMLAVKYLQLVENTYSPDSLGYDLIRDLISVIRAKNYVEATSRYNHFHSRIEGASPSQLRDPVHEPCSCPHCPRHKVTSMGQQAHESETQNIQNVQKS

NCBI Accession NP_148952.1
Location 289-1059
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGTCGCCGTCTCAACTTCGAGACCCCGTACACGAGCCGTGTAGCTGTCCCCACTGTCCGCGTCACAAAGTCACGAGCATGGGCCAACAGGCCCATGAATCGGAAACCCAGAATATACAGAATGTACAGAAGTCCTGATGTTCCCAGAGGATGCGAAGGCCCATGTAAGGTTCAGTCGTTCGAGTCTAGACATGACATATCCCATATTGGGAAGGTAATGTGTATTAGTGATGTCACCCGTGGAATTGGGCTAACTCATAGGGTCGGTAAGAGGTTTTGTGTTAAGTCCGTATATGTATTGGGCAAGGTGTGGATGGATGAGAGTATCAAAACTAAGAATCACACGAATAGTGTGATGTTTTTTTTGTGTCGTGACAGGAGGCCTGTTGACAAACCCCAGGATTTTGGTGAGGTGTTTAATATGTTTGATAATGAGCCCAGTACTGCAACTGTGAAGAATGTTTTTCGTGATCGCTACCAAGTATTGAGGAAATGGCACGCAACTGTCACTGGTGGAACCTATGCGTCCAAGGAGCAGGCTTTGGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCGTCTACGCACGCCTCTAATCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCTGTATCTAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFETPYTSRVAVPTVRVTKSRAWANRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDISHIGKVMCISDVTRGIGLTHRVGKRFCVKSVYVLGKVWMDESIKTKNHTNSVMFFLCRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVFRDRYQVLRKWHATVTGGTYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMASTHASNPVYATLKIRIYFYDSVSN

NCBI Accession NP_148953.1
Location 1056-1460
Gene Name C3
Protein Name C3
Coding Region ATGGATTCTCGCACAGGGGAGTACATCAATGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGCGCATTCCTTCAGAATCACGACATAATCACAATGCAGATCCAATTCAATCACAACCTGAGGAAGGCATTGGGGATTCACAAGTGTTTTCTAATCTTCCGAATCTGGATGACTTCACAACCTCAGACTGGTCGTTTCTTAAGGGTCTTTAAGAACCAAGCACTTAAATATTTAGATAGTTTAGGGGTTATTAGTTTAAACAATGTAATTAGAGCAGTAGATCATGTTTTATGGGATGTATTGCATCACATTTTGTACGTTGAACAATCACATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEYINAAQAENGVYIWEIQNPLYFKITEHHNRAFLQNHDIITMQIQFNHNLRKALGIHKCFLIFRIWMTSQPQTGRFLRVFKNQALKYLDSLGVISLNNVIRAVDHVLWDVLHHILYVEQSHSIKFNIY

NCBI Accession NP_148954.1
Location 1201-1605
Gene Name C2
Protein Name C2
Coding Region ATGCGACCTTCGTCACCCTCGAAGAGCCACTCTACTCAGGTACCCATCAAAGTCCAACACAGGTTAGCGAAGAAGAGCAACAGACGTCGGAGGGTTGATCTACCCTGTGGATGCTCATACTTCATAGCCCTAGCCTGTCATAACCATGGATTCTCGCACAGGGGAGTACATCAATGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGCGCATTCCTTCAGAATCACGACATAATCACAATGCAGATCCAATTCAATCACAACCTGAGGAAGGCATTGGGGATTCACAAGTGTTTTCTAATCTTCCGAATCTGGATGACTTCACAACCTCAGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRPSSPSKSHSTQVPIKVQHRLAKKSNRRRRVDLPCGCSYFIALACHNHGFSHRGVHQCSSSREWRVYLGDTKSPLFQDNGAPQPRIPSESRHNHNADPIQSQPEEGIGDSQVFSNLPNLDDFTTSDWSFLKGL

NCBI Accession NP_148955.1
Location 1508-2593
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCAGCCACCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATCTCGAAACCCCAACTTCTAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAGGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGTGATGTTAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCAAAAGCACAGGCCCTCAATATATTAAAAGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAACTTAAATTCAAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCCCCTTTTTTATCTTCTTCTTTCGACCAAGTTCCAGAAGAACTTGAAGAGTGGGCATGTGAAAACGTTGTCAGTGCCGCTGCGCGGCCTATCAGGCCCATTAGTATTGTAATTGAGGGTGATAGTCGTACCGGAAAAACAATGTGGGCCAGGTCACTAGGACCACACAATTATTTGTGCGGTCATCTCGACCTGAGTCCAAAAGTGTACAGTAATGATGCCTGGTATAACGTCATTGATGACGTCGATCCGCACTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAACCTGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGCTATAAAGAGTATCTGGATGAAGAGAAAAACAGTGCGCTTAAAAACTGGGCTCTGAAGAATGCGACCTTCGTCACCCTCGAAGAGCCACTCTACTCAGGTACCCATCAAAGTCCAACACAGGTTAGCGAAGAAGAGCAACAGACGTCGGAGGGTTGA
Protein Sequence MAATNRFKINAKNYFLTYPKCSLTKEEALSQLLNLETPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFLSSSFDQVPEELEEWACENVVSAAARPIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEEPLYSGTHQSPTQVSEEEQQTSEG

NCBI Accession NP_148956.1
Location 2143-2436
Gene Name C4
Protein Name C4
Coding Region ATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAGGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGTGATGTTAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCAAAAGCACAGGCCCTCAATATATTAA
Protein Sequence MGLLTCMFSSSSKENSSAGTIDSSTLPPQPGQHISIRTFRELKAQVMLKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGQKHRPSIY

References More References in PubMed

1

Characterisation of Sri Lankan cassava mosaic virus and Indian cassava mosaic virus: evidence for acquisition of a DNA B component by a monopartite begomovirus.

Saunders K, et al.  Virology. 2002 Feb 1;293(1):63-74. doi: 10.1006/viro.2001.1251.

PMID: 11853400
2

Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India.

Das S, et al.  Arch Virol. 2018 Sep;163(9):2551-2554. doi: 10.1007/s00705-018-3861-3. Epub 2018 May 9.

PMID: 29744588
3

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939