Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000919175.1 |
Isolate | Jamaica: Spanish Town |
Release date | 2015/2/22 |
Submitter | Simmonds-Gordon,R., Collins-Fairclough,A., Stewart,C., Roye,M. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009026400.1 |
---|---|
Location | 183-938 |
Gene Name | CP |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGATGCCCCATGGCGTTCAATGGCGGGAACGTCCAAGGTTAGTCGCAATGCCAATTATTCTCCTCGATCAGGCATTACCCAGAAGTCCAGCAAGGCCCAGGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGACGCTGAGGACGCCCGATGTGCCCAGAGGCTGTGAAGGGCCTTGCAAGGTCCAGTCTTATGAACAGCGCCACGACATCTCACATGTGGGCAAGGTCATGTGCATATCTGACGTGACACGTGGTAGTGGCATTACCCATCGTGTGGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATATTAGGGAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACTGCGTCATGTTCTGGTTGGTCAGAGACCGTAGACCCTATGGCACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACGGTTAAGAACGATCTGCGTGATCGTTACCAGGTCATGCACCGGTTCTACGCCAAGGTCACGGGTGGACAGTATGCCAGCAACGAGCAGGCGATTGTTAAGCGGTTCTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAGGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGGTCACCAATTAA |
Protein Sequence | MPKRDAPWRSMAGTSKVSRNANYSPRSGITQKSSKAQEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGSGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNCVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession | YP_009026401.1 |
---|---|
Location | 935-1333 |
Gene Name | REn |
Protein Name | REn |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCACATCAGGCAGAGAATGGCGCGTATACCTGGGAGATAGAAAATCCCCTGTATTTCAGAATATACAGAGTAGAGGACATGCTATACACCAGGACACGAGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACTTATTTGCTTAGGTTTAGGCACTTAGTCAATATGTACTTAGATCAATTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCGACAGACAGACCATATGTAAATCATGTACTGGAAAATCACTCAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGEPITAHQAENGAYTWEIENPLYFRIYRVEDMLYTRTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSTTASGTTYLLRFRHLVNMYLDQLGVISINNVIRAVRFATDRPYVNHVLENHSIKFNIY |
NCBI Accession | YP_009026402.1 |
---|---|
Location | 1080-1469 |
Gene Name | TrAP |
Protein Name | TrAP |
Coding Region | ATGCGATCTTCGTCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGATATAGAGTGCGGGTGCTCCATATACGTTCATCTCGACTGCAGGGGACATGGATTCACGCACAGGGGAACCCATCACTGCACATCAGGCAGAGAATGGCGCGTATACCTGGGAGATAGAAAATCCCCTGTATTTCAGAATATACAGAGTAGAGGACATGCTATACACCAGGACACGAGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACTTATTTGCTTAG |
Protein Sequence | MRSSSPSQPPSIKKAHRQAKRRAIRRRRIDIECGCSIYVHLDCRGHGFTHRGTHHCTSGREWRVYLGDRKSPVFQNIQSRGHAIHQDTSIPHPDTVQPQPEESVGSPQGLPELPSLDDIDDSFWNDLFA |
NCBI Accession | YP_009026403.1 |
---|---|
Location | 1381-2466 |
Gene Name | Rep |
Protein Name | Rep |
Coding Region | ATGCCACGAAAGGGTTCTTTCTCAATTAAAGCCAAAAACTATTTCCTCACTTATCCCCAGTGCTCTCTTACCAAAGAAGAAGCACTTTCACAATTACAAAACCTAAATACTCCGATAAACAAAAAGTTCATCAAAATCTGCAGAGAGCTTCATGAGAATGGGCAGCCTCATCTCCATGTGCTCATACAGTTCGAAGGGAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCAACACGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGACGAAGTGCTAGGGGAGGCTGCCAATCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGATTCTGTTCAATCTGCCATGGCGATTTTAAAAGAAGAACAGCCAAAAGATTTCGTCTTGCAGAATCATAACATCCGCTCCAATCTCGAAAGAATATTCGCAAAGGCTCCGGAACCGTGGGTCCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCGGACGAGATGCAAGAATGGGCGGATGATTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATAAGTGTCATAGTCGAAGGTGATTCACGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAACTATCTCAGTGGACACTTAGACTTCAATCACCGGGTCTACTCAAACGACGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGGCCCAAAAAAACTGGCAGTCAAATTGCAAATACGGAAAGCCAGTTCAAATTAAAGGCGGCATCCCAGCAATCGTGCTCTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTAGACAAAGAGGAAAATTCATCACTCAGGAACTGGACTATCAAGAATGCGATCTTCGTCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGA |
Protein Sequence | MPRKGSFSIKAKNYFLTYPQCSLTKEEALSQLQNLNTPINKKFIKICRELHENGQPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVQSAMAILKEEQPKDFVLQNHNIRSNLERIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGSAARPERPISVIVEGDSRTGKTMWARALGPHNYLSGHLDFNHRVYSNDVEYNVIDDVAPHYLKLKHWKELLGAQKNWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENSSLRNWTIKNAIFVTLTAPLYQEGTQASQEEGHQEETH |
NCBI Accession | YP_009026404.1 |
---|---|
Location | 2052-2315 |
Gene Name | AC4 |
Protein Name | AC4 |
Coding Region | ATGAGAATGGGCAGCCTCATCTCCATGTGCTCATACAGTTCGAAGGGAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCAACACGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGACGAAGTGCTAGGGGAGGCTGCCAATCTGCTAATGATTCATATGCCAAGGCGTTAA |
Protein Sequence | MRMGSLISMCSYSSKGSTTARITDSSIWSPQHGQHISIRTYRELNRAPTSSPTSTRTEIHWNGENSRSTDEVLGEAANLLMIHMPRR |
NCBI Accession | YP_009026405.1 |
---|---|
Location | 392-1144 |
Gene Name | NSP |
Protein Name | NSP |
Coding Region | ATGTATCCTATGAGGAATAAACGTGGTTTCTATTTTAGTCCACGTCGGTATTATCCACGTAATGCTGTGTTTAAGCGATCAACAACTTCGAAGAGATATGAGGGGAAACGACGACGTGTAGATGCTGGGAAGCCCAGTGATGAGCCGAAGATGCATGTTCAGTATGGGCCAGAGTTTGCCATGGCCCATAATTCAGCTATCTCGACCTATATCACCTACCCCAGCCTGGGTAAGACCGAGCCCAGTCGAAGCCGGTCCTATATTAAGTTGAGAGGGCTTCGTTTCAAAGGGACCGTGAAGATTGAACGTGTCCAAGCGGATGTGAACATGGACGGTTCGACGCCCAAGGTCGAAGGAGTGTTTTCTCTTGTCGTTGTCGTGGATCGCAAGCCTCACTTGGGTCCTTCTGGTTGCTTGCATACATTTGACGAGCTCTTCGGTGCTAGGATACACAGTCATGGTAACCTCAGCGTGACTCCCTCTTTGAAGGAGCGTTACTATATACGCCACGTGTGCAAACGTGTATTGTCCGTGGAGAAGGACACGCTGATGGTAGACGTGGAAGGATCCATTTCTCTCTCTAACAGGCGTTTCAACTGTTGGTCTACGTTTAAGGACGTGGATCGTGAATCATGCAACGGTGTTTATGATAATATCAGCAAGAACGCTCTGTTAGTCTATTATTGTTGGATGTCTGATACTGTGTCTAAGGCGTCAACTTTTGTATCTTATGACCTTGATTATGTCGGATGA |
Protein Sequence | MYPMRNKRGFYFSPRRYYPRNAVFKRSTTSKRYEGKRRRVDAGKPSDEPKMHVQYGPEFAMAHNSAISTYITYPSLGKTEPSRSRSYIKLRGLRFKGTVKIERVQADVNMDGSTPKVEGVFSLVVVVDRKPHLGPSGCLHTFDELFGARIHSHGNLSVTPSLKERYYIRHVCKRVLSVEKDTLMVDVEGSISLSNRRFNCWSTFKDVDRESCNGVYDNISKNALLVYYCWMSDTVSKASTFVSYDLDYVG |
NCBI Accession | YP_009026406.1 |
---|---|
Location | 1207-2088 |
Gene Name | MP |
Protein Name | MP |
Coding Region | ATGGATTCTCAGTTAGCAAATCCTCCGAACGCCTTCAATTACATAGAGTCCCATCGGGACGAATACCAGCTTTCGCATGATCTAACTGAGATAGTACTGCAATTCCCTTCCACGGCGGCGCAATTAACAGCTAGACTCAGTCGTAGCTGCATGAAAATCGACCATTGCGTCATAGAATACAGACAACAAGTTCCGATCAACGCCGCCGGAACGGTGATAGTGGAGATCCACGACAAGCGAATGACGGACAACGAATCATTGCAGGCATCATGGACATTTCCGATCAGATGCAACATAGATCTCCACTATTTCTCGGCTTCGTTCTTCTCGCTAAAGGACCCAATTCCATGGAAGCTATACTACCGAGTATGCGACACCAATGTCCATCAGAGGACCCACTTCGCCAAATTCAAAGGGAAGCTGAAGTTGTCCACGGCAAAACACTCGGTCGACATCCCTTTCCGGGCACCAACAGTGAAGATCCTATCCAAACAGTTCACAGACAAGGACGTGGACTTCTCCCATGTCGACTATGGGAAATGGGAAAGGAAGCTCATCAGGTGCGCGTCCATGTCCAGAGTTGGGCTAAGAGGCCCAATCGAGATAAGGCCTGGAGAGTCATGGGCTTCCAGGAGCACAATAGGAGCTGGTCATTCGGACGCTGATTCAGAGATGGAAAACGAACTCCATCCATACAGGCACCTGAGCAGGCTTGGGACCAGCGTCCTAGATCCGGGAGAGTCTGCTTCGATAGTGGGGGCCCAAAGAGCCGAGTCCAATATCACAATGTCAATGGGCCAGTTGAATGAGCTAGTTAGGACTGCGGTCCAAGAATGTATTAATAATAATTGTCAGCCTTCTCAGGCCAAGTCGTTAAAATAA |
Protein Sequence | MDSQLANPPNAFNYIESHRDEYQLSHDLTEIVLQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINAAGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKLIRCASMSRVGLRGPIEIRPGESWASRSTIGAGHSDADSEMENELHPYRHLSRLGTSVLDPGESASIVGAQRAESNITMSMGQLNELVRTAVQECINNNCQPSQAKSLK |
1 |
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2 |
First Report of Cucumber mosaic virus on Jatropha curcas in India. Raj SK, et al. Plant Dis. 2008 Jan;92(1):171. doi: 10.1094/PDIS-92-1-0171C. PMID: 30786384 |
3 |
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4 |
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5 |
Snehi SK, et al. Virus Genes. 2011 Aug;43(1):93-101. doi: 10.1007/s11262-011-0605-9. Epub 2011 Apr 9. PMID: 21479677 |
6 |
Melgarejo TA, et al. Phytopathology. 2015 Jan;105(1):141-53. doi: 10.1094/PHYTO-05-14-0135-R. PMID: 25163012 |
7 |
Wang G, et al. Virus Genes. 2014 Apr;48(2):402-5. doi: 10.1007/s11262-014-1034-3. Epub 2014 Jan 21. PMID: 24445901 |
8 |
Charoenvilaisiri S, et al. Virol J. 2021 May 18;18(1):100. doi: 10.1186/s12985-021-01572-6. PMID: 34006310 |
9 |
Mgbechi-Ezeri JU, et al. Plant Dis. 2008 Dec;92(12):1709. doi: 10.1094/PDIS-92-12-1709B. PMID: 30764308 |
10 |
Srivastava A, et al. Arch Virol. 2015 May;160(5):1359-62. doi: 10.1007/s00705-015-2375-5. Epub 2015 Feb 27. PMID: 25716923 |