| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000919175.1 |
| Isolate | Jamaica: Spanish Town |
| Release date | 2015/2/22 |
| Submitter | Simmonds-Gordon,R., Collins-Fairclough,A., Stewart,C., Roye,M. |
| Host | |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
| NCBI Accession | YP_009026400.1 |
|---|---|
| Location | 183-938 |
| Gene Name | CP |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGATGCCCCATGGCGTTCAATGGCGGGAACGTCCAAGGTTAGTCGCAATGCCAATTATTCTCCTCGATCAGGCATTACCCAGAAGTCCAGCAAGGCCCAGGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGACGCTGAGGACGCCCGATGTGCCCAGAGGCTGTGAAGGGCCTTGCAAGGTCCAGTCTTATGAACAGCGCCACGACATCTCACATGTGGGCAAGGTCATGTGCATATCTGACGTGACACGTGGTAGTGGCATTACCCATCGTGTGGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATATTAGGGAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACTGCGTCATGTTCTGGTTGGTCAGAGACCGTAGACCCTATGGCACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACGGTTAAGAACGATCTGCGTGATCGTTACCAGGTCATGCACCGGTTCTACGCCAAGGTCACGGGTGGACAGTATGCCAGCAACGAGCAGGCGATTGTTAAGCGGTTCTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAGGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGGTCACCAATTAA |
| Protein Sequence | MPKRDAPWRSMAGTSKVSRNANYSPRSGITQKSSKAQEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGSGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNCVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | YP_009026401.1 |
|---|---|
| Location | 935-1333 |
| Gene Name | REn |
| Protein Name | REn |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCACATCAGGCAGAGAATGGCGCGTATACCTGGGAGATAGAAAATCCCCTGTATTTCAGAATATACAGAGTAGAGGACATGCTATACACCAGGACACGAGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACTTATTTGCTTAGGTTTAGGCACTTAGTCAATATGTACTTAGATCAATTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCGACAGACAGACCATATGTAAATCATGTACTGGAAAATCACTCAATAAAATTCAATATTTATTAA |
| Protein Sequence | MDSRTGEPITAHQAENGAYTWEIENPLYFRIYRVEDMLYTRTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSTTASGTTYLLRFRHLVNMYLDQLGVISINNVIRAVRFATDRPYVNHVLENHSIKFNIY |
| NCBI Accession | YP_009026402.1 |
|---|---|
| Location | 1080-1469 |
| Gene Name | TrAP |
| Protein Name | TrAP |
| Coding Region | ATGCGATCTTCGTCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGATATAGAGTGCGGGTGCTCCATATACGTTCATCTCGACTGCAGGGGACATGGATTCACGCACAGGGGAACCCATCACTGCACATCAGGCAGAGAATGGCGCGTATACCTGGGAGATAGAAAATCCCCTGTATTTCAGAATATACAGAGTAGAGGACATGCTATACACCAGGACACGAGTATACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACTTATTTGCTTAG |
| Protein Sequence | MRSSSPSQPPSIKKAHRQAKRRAIRRRRIDIECGCSIYVHLDCRGHGFTHRGTHHCTSGREWRVYLGDRKSPVFQNIQSRGHAIHQDTSIPHPDTVQPQPEESVGSPQGLPELPSLDDIDDSFWNDLFA |
| NCBI Accession | YP_009026403.1 |
|---|---|
| Location | 1381-2466 |
| Gene Name | Rep |
| Protein Name | Rep |
| Coding Region | ATGCCACGAAAGGGTTCTTTCTCAATTAAAGCCAAAAACTATTTCCTCACTTATCCCCAGTGCTCTCTTACCAAAGAAGAAGCACTTTCACAATTACAAAACCTAAATACTCCGATAAACAAAAAGTTCATCAAAATCTGCAGAGAGCTTCATGAGAATGGGCAGCCTCATCTCCATGTGCTCATACAGTTCGAAGGGAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCAACACGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGACGAAGTGCTAGGGGAGGCTGCCAATCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGATTCTGTTCAATCTGCCATGGCGATTTTAAAAGAAGAACAGCCAAAAGATTTCGTCTTGCAGAATCATAACATCCGCTCCAATCTCGAAAGAATATTCGCAAAGGCTCCGGAACCGTGGGTCCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCGGACGAGATGCAAGAATGGGCGGATGATTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATAAGTGTCATAGTCGAAGGTGATTCACGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAACTATCTCAGTGGACACTTAGACTTCAATCACCGGGTCTACTCAAACGACGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGGCCCAAAAAAACTGGCAGTCAAATTGCAAATACGGAAAGCCAGTTCAAATTAAAGGCGGCATCCCAGCAATCGTGCTCTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTAGACAAAGAGGAAAATTCATCACTCAGGAACTGGACTATCAAGAATGCGATCTTCGTCACCCTCACAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGACGCATTGA |
| Protein Sequence | MPRKGSFSIKAKNYFLTYPQCSLTKEEALSQLQNLNTPINKKFIKICRELHENGQPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVQSAMAILKEEQPKDFVLQNHNIRSNLERIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGSAARPERPISVIVEGDSRTGKTMWARALGPHNYLSGHLDFNHRVYSNDVEYNVIDDVAPHYLKLKHWKELLGAQKNWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENSSLRNWTIKNAIFVTLTAPLYQEGTQASQEEGHQEETH |
| NCBI Accession | YP_009026404.1 |
|---|---|
| Location | 2052-2315 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGAGAATGGGCAGCCTCATCTCCATGTGCTCATACAGTTCGAAGGGAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCAACACGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGACGAAGTGCTAGGGGAGGCTGCCAATCTGCTAATGATTCATATGCCAAGGCGTTAA |
| Protein Sequence | MRMGSLISMCSYSSKGSTTARITDSSIWSPQHGQHISIRTYRELNRAPTSSPTSTRTEIHWNGENSRSTDEVLGEAANLLMIHMPRR |
| NCBI Accession | YP_009026405.1 |
|---|---|
| Location | 392-1144 |
| Gene Name | NSP |
| Protein Name | NSP |
| Coding Region | ATGTATCCTATGAGGAATAAACGTGGTTTCTATTTTAGTCCACGTCGGTATTATCCACGTAATGCTGTGTTTAAGCGATCAACAACTTCGAAGAGATATGAGGGGAAACGACGACGTGTAGATGCTGGGAAGCCCAGTGATGAGCCGAAGATGCATGTTCAGTATGGGCCAGAGTTTGCCATGGCCCATAATTCAGCTATCTCGACCTATATCACCTACCCCAGCCTGGGTAAGACCGAGCCCAGTCGAAGCCGGTCCTATATTAAGTTGAGAGGGCTTCGTTTCAAAGGGACCGTGAAGATTGAACGTGTCCAAGCGGATGTGAACATGGACGGTTCGACGCCCAAGGTCGAAGGAGTGTTTTCTCTTGTCGTTGTCGTGGATCGCAAGCCTCACTTGGGTCCTTCTGGTTGCTTGCATACATTTGACGAGCTCTTCGGTGCTAGGATACACAGTCATGGTAACCTCAGCGTGACTCCCTCTTTGAAGGAGCGTTACTATATACGCCACGTGTGCAAACGTGTATTGTCCGTGGAGAAGGACACGCTGATGGTAGACGTGGAAGGATCCATTTCTCTCTCTAACAGGCGTTTCAACTGTTGGTCTACGTTTAAGGACGTGGATCGTGAATCATGCAACGGTGTTTATGATAATATCAGCAAGAACGCTCTGTTAGTCTATTATTGTTGGATGTCTGATACTGTGTCTAAGGCGTCAACTTTTGTATCTTATGACCTTGATTATGTCGGATGA |
| Protein Sequence | MYPMRNKRGFYFSPRRYYPRNAVFKRSTTSKRYEGKRRRVDAGKPSDEPKMHVQYGPEFAMAHNSAISTYITYPSLGKTEPSRSRSYIKLRGLRFKGTVKIERVQADVNMDGSTPKVEGVFSLVVVVDRKPHLGPSGCLHTFDELFGARIHSHGNLSVTPSLKERYYIRHVCKRVLSVEKDTLMVDVEGSISLSNRRFNCWSTFKDVDRESCNGVYDNISKNALLVYYCWMSDTVSKASTFVSYDLDYVG |
| NCBI Accession | YP_009026406.1 |
|---|---|
| Location | 1207-2088 |
| Gene Name | MP |
| Protein Name | MP |
| Coding Region | ATGGATTCTCAGTTAGCAAATCCTCCGAACGCCTTCAATTACATAGAGTCCCATCGGGACGAATACCAGCTTTCGCATGATCTAACTGAGATAGTACTGCAATTCCCTTCCACGGCGGCGCAATTAACAGCTAGACTCAGTCGTAGCTGCATGAAAATCGACCATTGCGTCATAGAATACAGACAACAAGTTCCGATCAACGCCGCCGGAACGGTGATAGTGGAGATCCACGACAAGCGAATGACGGACAACGAATCATTGCAGGCATCATGGACATTTCCGATCAGATGCAACATAGATCTCCACTATTTCTCGGCTTCGTTCTTCTCGCTAAAGGACCCAATTCCATGGAAGCTATACTACCGAGTATGCGACACCAATGTCCATCAGAGGACCCACTTCGCCAAATTCAAAGGGAAGCTGAAGTTGTCCACGGCAAAACACTCGGTCGACATCCCTTTCCGGGCACCAACAGTGAAGATCCTATCCAAACAGTTCACAGACAAGGACGTGGACTTCTCCCATGTCGACTATGGGAAATGGGAAAGGAAGCTCATCAGGTGCGCGTCCATGTCCAGAGTTGGGCTAAGAGGCCCAATCGAGATAAGGCCTGGAGAGTCATGGGCTTCCAGGAGCACAATAGGAGCTGGTCATTCGGACGCTGATTCAGAGATGGAAAACGAACTCCATCCATACAGGCACCTGAGCAGGCTTGGGACCAGCGTCCTAGATCCGGGAGAGTCTGCTTCGATAGTGGGGGCCCAAAGAGCCGAGTCCAATATCACAATGTCAATGGGCCAGTTGAATGAGCTAGTTAGGACTGCGGTCCAAGAATGTATTAATAATAATTGTCAGCCTTCTCAGGCCAAGTCGTTAAAATAA |
| Protein Sequence | MDSQLANPPNAFNYIESHRDEYQLSHDLTEIVLQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINAAGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKLIRCASMSRVGLRGPIEIRPGESWASRSTIGAGHSDADSEMENELHPYRHLSRLGTSVLDPGESASIVGAQRAESNITMSMGQLNELVRTAVQECINNNCQPSQAKSLK |
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