Jatropha mosaic Nigeria virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000900435.1 |
| Isolate |
Nigeria |
| Release date |
2015/2/22 |
| Submitter |
Kashina,B.D., Alegbejo,M.D., Banwo,O.O., Nielsen,S.L., Nicolaisen,M. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATACCCGCTCAACGTGGTCCCCACGTGACAAGACATGTCGGCCACTCATGATGCGTCTGTTGAGGTTAGATATGTGTGGTCCCAGGATAAAAACTTCGTCACGAAGTTGGTGAGTCACACAATGTGGGACCCTTTAAGAAATGAATTTCCAGAAACCCTTCATGGGTTTCGTTGTATGTTGGCTGTGAAGTTTTTGCAGGCTCTTGTGGATAGTTACAGTCCGGATACGAAGGGATACGAATACATACGGGATCTTATATGTATTCTACGCTCGCGACATTATAATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAGGAGCCCAGACGTCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAACGCGATGATGTGAAACACACCGGTGTTGTGCGGTGTGTTAGTGATGTTACCCGTGGTTCTGGTATTACCCATCGGGTAGGTAAGCGTTTTTGCATCAAGTCCATCTATATTCTCGGGAAGATTTGGATGGATGAGAATATCAAGAAGCAGAACCACACGAACCAGGTTATGTTTTATTTGGTGCGTGATCGTAGACCCTATGGGACGAGTCCAATGGACTTTGGACAAGTGTTTAACATGTTTGACAACGAGCCGTCAACGGCCACTGTGAAGAACGATCTGCGAGATCGCTTCCAGGTGCTACGGAAGTTCTATGCTACTGTCACTGGTGGTCCTTCGGGAATGAAGGAACAGGCTTTAGTTAAGAGGTTCTTTAGGATTAACAATCATGTTGTTTACAACCATCAGGAACAGGCGAAGTATGAGAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGTGTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAATAAAATTTAAATTTTATTTCATGAAATTCCTGAACTTCGATACAAGTCCTAATTACATTATGTAATACATGATCGACAGATCTAATAACATTATTAATGGAAATTACACCTAACATGTCTAAGTACTTAAGGACTTGGTATTTAAATACTCTCAAGAAAGTCCCAGACCGAGTCTGTGAAGTCGTCCAGATTCGGAAGTTCAGATAACACTTGTGAAGACCCAGTTCCTTCCGGAGGTTGTGGTTGAACCGGATCTGGATGGTGATGATGTCGTGGTTGGTGTTGAATGGCCGCACGCTCTGCTCCGTGGTCGTGAAATATAGGGGATTGTTTATCTCCCAGATAAACACGCCATTCCCTGCTTGAGGAGCAGTGATGTACTCCCCGGTGCGTGAATCCATGGTTAGCACAGTTGAGATGTAGATAGTATGAGCAGCCGCACTCGAGATCGATGCGTCTACGACGTATTCTCTTGGTCTTCGCGATTCTGTGCTTGACTTTGATTGGTACCGGAGTAGAGTGGCTCACTGATGGTGATGAATGTTGCATTTTGAAGTGTCCACCGCTTCAAAGCTGAGTTCTTCTCTTCCTCCAAGAACTCTTTATAGGACGATGTCGGGCCAGGATTGCAGAGGAAGATTGTCGGGATTCCGCCTTTAATTTGAATTGGCTTGCCGTATTTCGTGTTGCTTTGCCAATCACGCTGGGCCCCCATGAACTCTTTGAAATGTTTTAGATAGTGCGGATCCACGTCGTCGATGATGTTGTACCAGGCGTCATTTGAATAGACCTTGGGACTAATGTCCAAATGACCACATAAGTAATTATGTGGACCCAGGCTTCGTGCCCACATTGTTTTGCCCGTACGACTATCGCCCTCGATAACAATACTTTTAGGTCTCCATGGCCGCGCAGCGGCTGCCTTCACATTGTCGGCTACCCACTGCTCAAGTTCGTCCGGAACTTGATCAAATGAAGAGGACATAAAAGGAGATCTATAAATCTCTACGGGAGGAGTGAATATCCTCTCTAAATTGGAATTAAGATTATGAAATTGTAATACATAATCCTTTGGGGCTAATTCTTTAATTAGTCGTAGGGCTTCAGACTTACTGCCTGCGTTCAGCGCCTGTGCGTAAGCATCGTTTATTGATTGTTTGCCTCCTCTCGCTGATCGTCTATCGATCTGGAATTGGCCCCAGTCGAGGACGTCTCCGTCCTTCTCAAGATATGCCTTGACATCGGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTGCAATTCGTGAGTCGGACTTTGCCCTCGAATTGGACGAGCACATGCAGATGAGGTTCCCCATTTTGATGCAGTTCTCTGCAGATTCTTATGAATTTGGGGTTTGAAGGGAGTGACAGATTGGTTAATTGCGAAAGAGTTTCTTCTTTCGATAACGAGCACTGCGGATATGTAAGAAATAAGTTCTTACAATTAATTTGGAATTTTTTTGGAGCGTTAGGCATGTTGACTTTGTATGGGTACCCTTGACCGCTCTCGTCTAATCCTCGGGTGCAATTATATTGGTACCCATATATAGGGGGGGTACCAAATGGCACGCTGGTAATTTTTACAACTTCATGTTTGAAATTCAAAGTTTGAAAGTTCCACTAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_006905835.1
|
|
Location
|
138-479 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGTGGGACCCTTTAAGAAATGAATTTCCAGAAACCCTTCATGGGTTTCGTTGTATGTTGGCTGTGAAGTTTTTGCAGGCTCTTGTGGATAGTTACAGTCCGGATACGAAGGGATACGAATACATACGGGATCTTATATGTATTCTACGCTCGCGACATTATAATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAG |
|
Protein Sequence
|
MWDPLRNEFPETLHGFRCMLAVKFLQALVDSYSPDTKGYEYIRDLICILRSRHYNEANIRYGLLVSRIQCTPASQLRESSGVTCSCEHCPRHFKKTGLEKQAHEQEAQVLPDV |
|
NCBI Accession
|
YP_006905836.1
|
|
Location
|
301-1074 |
|
Protein Name
|
V1 |
|
Coding Region
|
ATGAAGCGAACATACGATATGGCCTTCTCGTCTCCCGTATCCAATGTACGCCGGCGTCTCAACTTCGGGAGTCCTCTGGCGTTACCTGCTCCTGCGAGCACTGCCCCCGGCACTTCAAGAAGACGGGCCTGGAGAAACAGGCCCATGAACAGGAAGCCCAGGTTCTACCGGACGTTTAGGAGCCCAGACGTCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAGCAACGCGATGATGTGAAACACACCGGTGTTGTGCGGTGTGTTAGTGATGTTACCCGTGGTTCTGGTATTACCCATCGGGTAGGTAAGCGTTTTTGCATCAAGTCCATCTATATTCTCGGGAAGATTTGGATGGATGAGAATATCAAGAAGCAGAACCACACGAACCAGGTTATGTTTTATTTGGTGCGTGATCGTAGACCCTATGGGACGAGTCCAATGGACTTTGGACAAGTGTTTAACATGTTTGACAACGAGCCGTCAACGGCCACTGTGAAGAACGATCTGCGAGATCGCTTCCAGGTGCTACGGAAGTTCTATGCTACTGTCACTGGTGGTCCTTCGGGAATGAAGGAACAGGCTTTAGTTAAGAGGTTCTTTAGGATTAACAATCATGTTGTTTACAACCATCAGGAACAGGCGAAGTATGAGAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGTGTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAA |
|
Protein Sequence
|
MKRTYDMAFSSPVSNVRRRLNFGSPLALPAPASTAPGTSRRRAWRNRPMNRKPRFYRTFRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFYLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFYATVTGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYENHTENALLLYLACTHASNPVYATLKIRIYFYDAVTN |
|
NCBI Accession
|
YP_006905837.1
|
|
Location
|
1071-1475 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGATTCACGCACCGGGGAGTACATCACTGCTCCTCAAGCAGGGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTATATTTCACGACCACGGAGCAGAGCGTGCGGCCATTCAACACCAACCACGACATCATCACCATCCAGATCCGGTTCAACCACAACCTCCGGAAGGAACTGGGTCTTCACAAGTGTTATCTGAACTTCCGAATCTGGACGACTTCACAGACTCGGTCTGGGACTTTCTTGAGAGTATTTAAATACCAAGTCCTTAAGTACTTAGACATGTTAGGTGTAATTTCCATTAATAATGTTATTAGATCTGTCGATCATGTATTACATAATGTAATTAGGACTTGTATCGAAGTTCAGGAATTTCATGAAATAAAATTTAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGEYITAPQAGNGVFIWEINNPLYFTTTEQSVRPFNTNHDIITIQIRFNHNLRKELGLHKCYLNFRIWTTSQTRSGTFLRVFKYQVLKYLDMLGVISINNVIRSVDHVLHNVIRTCIEVQEFHEIKFKFY |
|
NCBI Accession
|
YP_006905838.1
|
|
Location
|
1216-1623 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGCAACATTCATCACCATCAGTGAGCCACTCTACTCCGGTACCAATCAAAGTCAAGCACAGAATCGCGAAGACCAAGAGAATACGTCGTAGACGCATCGATCTCGAGTGCGGCTGCTCATACTATCTACATCTCAACTGTGCTAACCATGGATTCACGCACCGGGGAGTACATCACTGCTCCTCAAGCAGGGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTATATTTCACGACCACGGAGCAGAGCGTGCGGCCATTCAACACCAACCACGACATCATCACCATCCAGATCCGGTTCAACCACAACCTCCGGAAGGAACTGGGTCTTCACAAGTGTTATCTGAACTTCCGAATCTGGACGACTTCACAGACTCGGTCTGGGACTTTCTTGAGAGTATTTAA |
|
Protein Sequence
|
MQHSSPSVSHSTPVPIKVKHRIAKTKRIRRRRIDLECGCSYYLHLNCANHGFTHRGVHHCSSSREWRVYLGDKQSPIFHDHGAERAAIQHQPRHHHHPDPVQPQPPEGTGSSQVLSELPNLDDFTDSVWDFLESI |
|
NCBI Accession
|
YP_006905839.1
|
|
Location
|
1532-2614 |
|
Protein Name
|
C1 |
|
Coding Region
|
ATGCCTAACGCTCCAAAAAAATTCCAAATTAATTGTAAGAACTTATTTCTTACATATCCGCAGTGCTCGTTATCGAAAGAAGAAACTCTTTCGCAATTAACCAATCTGTCACTCCCTTCAAACCCCAAATTCATAAGAATCTGCAGAGAACTGCATCAAAATGGGGAACCTCATCTGCATGTGCTCGTCCAATTCGAGGGCAAAGTCCGACTCACGAATTGCAGATTGTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCCGATGTCAAGGCATATCTTGAGAAGGACGGAGACGTCCTCGACTGGGGCCAATTCCAGATCGATAGACGATCAGCGAGAGGAGGCAAACAATCAATAAACGATGCTTACGCACAGGCGCTGAACGCAGGCAGTAAGTCTGAAGCCCTACGACTAATTAAAGAATTAGCCCCAAAGGATTATGTATTACAATTTCATAATCTTAATTCCAATTTAGAGAGGATATTCACTCCTCCCGTAGAGATTTATAGATCTCCTTTTATGTCCTCTTCATTTGATCAAGTTCCGGACGAACTTGAGCAGTGGGTAGCCGACAATGTGAAGGCAGCCGCTGCGCGGCCATGGAGACCTAAAAGTATTGTTATCGAGGGCGATAGTCGTACGGGCAAAACAATGTGGGCACGAAGCCTGGGTCCACATAATTACTTATGTGGTCATTTGGACATTAGTCCCAAGGTCTATTCAAATGACGCCTGGTACAACATCATCGACGACGTGGATCCGCACTATCTAAAACATTTCAAAGAGTTCATGGGGGCCCAGCGTGATTGGCAAAGCAACACGAAATACGGCAAGCCAATTCAAATTAAAGGCGGAATCCCGACAATCTTCCTCTGCAATCCTGGCCCGACATCGTCCTATAAAGAGTTCTTGGAGGAAGAGAAGAACTCAGCTTTGAAGCGGTGGACACTTCAAAATGCAACATTCATCACCATCAGTGAGCCACTCTACTCCGGTACCAATCAAAGTCAAGCACAGAATCGCGAAGACCAAGAGAATACGTCGTAG |
|
Protein Sequence
|
MPNAPKKFQINCKNLFLTYPQCSLSKEETLSQLTNLSLPSNPKFIRICRELHQNGEPHLHVLVQFEGKVRLTNCRLFDLVSPTRSAHFHPNIQGAKSSSDVKAYLEKDGDVLDWGQFQIDRRSARGGKQSINDAYAQALNAGSKSEALRLIKELAPKDYVLQFHNLNSNLERIFTPPVEIYRSPFMSSSFDQVPDELEQWVADNVKAAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDISPKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNSALKRWTLQNATFITISEPLYSGTNQSQAQNREDQENTS |
|
NCBI Accession
|
YP_006905840.1
|
|
Location
|
2221-2454 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGGAACCTCATCTGCATGTGCTCGTCCAATTCGAGGGCAAAGTCCGACTCACGAATTGCAGATTGTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGTCTAGCTCCGATGTCAAGGCATATCTTGAGAAGGACGGAGACGTCCTCGACTGGGGCCAATTCCAGATCGATAGACGATCAGCGAGAGGAGGCAAACAATCAATAA |
|
Protein Sequence
|
MGNLICMCSSNSRAKSDSRIADCSTWYPQPGQHISIRTFRELSLAPMSRHILRRTETSSTGANSRSIDDQREEANNQ |