Jatropha mosaic India virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002822725.1
Isolate India: U.P., Lucknow
Release date 2018/8/25
Submitter Snehi,S.K., Raj,S.K., Prasad,V.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038449
ACCGGATGGCCGCGCTCCCTGCTTTGTGGTTCCCCCCCCCCACGTGGAGTTGTCGCCCACTCAGAACGCTGCGTCAAGCTTGAATATCTGTGGTCCCTGTTTAAGTACTTCGTGAGCAAGTTAATACTTGCAAAATGTGGGATCCACTACTTAACGAGTTCCCAGACTCCGTTCACGGTTTCCGTTGTATGCTAGCGCTGAAGTACCTTCAGCTCGTCGAAAGTACTTATTCCCCTGATACGCTCGGTTACGATCTAATCCGGGACCTGATTTCTGTTATCAGGGCCAGAAGCTATGTCGAAGCGACCAGGAGATATCATCATTTCAACTCCCGCCTCGAAGGTACGTCGCCGTCTGATCTTCGACAGCTTATACAGCAGCCGTGCTTCTGTCTTCACTGTCCGCGTCACCAAAAGACAAGCCTGGACAAACAGGCCCATGAATCGGAAGCCCAGATGGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTGGTCCATATAGGTAAGGTAATGTGCATCTCTGATGTCACTCGTGGTGTTGGGCTAACTCATCGTGTGGGTAAGAGGTTTTGCGTTAAGTCCGTTTACATCCTGGGGAAGGTATGGATGGATGAAAATATCAAGACCAAGAATCACACTAATAGCGTGATGTTCTTCCTCGTTAGGGATCGTAGGCCTGTTGATAAGCCCCAGGATTTCGGTGAGGTGTTTAACATGTTTGATAATGAACCTAGTACAGCTACTGTGAAGAACATGCATCGTGATCGCTATCAAGTCCTCAGGAAGTGGAGTGCCACTGTCACTGGTGGTCAGTATGCTAGCAAGGAGCAGGCTTTAGTTAGACGTTTTTTTAGAGTTAATAATTATGTTGTGTATAATCAGCAAGAGGCTGGCAAGTATGAAAATCATACTGAGAATGCATTGATGCTGTACATGGCGTGTACTCACGCCTCTAATCCTGTATACGCTACGCTGAAGATTAGAATCTACTTCTACGATTCGGTCAGCAATTAATAAATTTTAAATTTTATTAAATTTGACTGCTCAATACTGTCAGTCCCTGTGAGTACACTGTACAATACATGTTCTACGGCGGTTAAAACCGTATTTATACATATGACCCCTAACATGTCCAGGTATTTGAGTACGTGGGTCTTAAATACCCTCAAGAAACGCAAGGTCTGAGGCCGTAAGGTCGTCCAGATTTTGAAATCCATCCAGCATTGATGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCCATCGTCGTTCCGAACGGCCGGCTGCTGTGGTCTATGATCTTGAAATAGAGGGGATTTGGAACCTCCCAGGTATAGACGCCATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGCACGTAGTACGAGCACCCGCAGTTGAGGTCTACTCTCCGTCGCCGGATGGCCCTACGCTTAGCTGCCCTGTGTTTAACCTTGATCGGCACTGGAGTAGAGTGGCCCGTCGAGGGAGATGAAGGTCGCATTTCTTATTGCCCAAGCCTTCAATGCCGTATTCTTCGGCTCGTCAAGGAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCACAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTATTTGGTGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGACCCTAGGACTCAAGTCCAGATGTCCACATAGGTAATTATGTGGACCCAATGCACGAGCCCACATAGTCTTACCTGTCCGACTATCGCCCTCGATTACGATTGACTTCGGTCTCAAAGGCCGCGCAGCGGGATCCATGACATTTTCATGGAACCATACATCGAGTTCTTCTGGAACTCGATCAAATGTCGACAGACCAAAAGGACTCTCATAGATAGTTTCAGGTGTTGTAAAAATTTTATCCAAATTGGCATTCAAATTATGAAACTGCAGGACGTAGTCTTTAGGAGCTAGCTCTCTAAGGATCTTAAGAGCCTCTGACTTACTGCCGCTGTTAATTGCGGCGGCGTATGCATCATTTGCCGACTGTTGGCCTCCCCGTGCAGACCTGCCGTCGACCTGGAATTCTCCCCATTCCAGAGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTTATTCTGGCATTTGAACTTGCCCTCGTACTGGACGAGCACATGCAGATGAGGTTCCCCATTCTCATGCAGTTCTCTGCAGATTTTAATGAATTTAGGGTTTGTAGGTGTTTCTAGGTTTTTAATTTGGGAAAGCGTCTCTTCTTTGGAGAGAGAGCATCTGGGATAAGTGAGGAAATAATTCTTGGCGTTTATAATAAAACGCTTAGGAGGTGACATTCTCTCTCCTCAATCGGTACTCAAACATTTAGCCCCTATATTAGGTACTCAATATATACATGAGACCCAAATGGCATATATGGTAATAATGGGAATATAATTTGAATTTGAAAGCGGCCATCCGTATAATATTTATAA

Gene Information

NCBI Accession YP_009506422.1
Location 135-491
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTACTTAACGAGTTCCCAGACTCCGTTCACGGTTTCCGTTGTATGCTAGCGCTGAAGTACCTTCAGCTCGTCGAAAGTACTTATTCCCCTGATACGCTCGGTTACGATCTAATCCGGGACCTGATTTCTGTTATCAGGGCCAGAAGCTATGTCGAAGCGACCAGGAGATATCATCATTTCAACTCCCGCCTCGAAGGTACGTCGCCGTCTGATCTTCGACAGCTTATACAGCAGCCGTGCTTCTGTCTTCACTGTCCGCGTCACCAAAAGACAAGCCTGGACAAACAGGCCCATGAATCGGAAGCCCAGATGGTACAGGATGTTCAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLLNEFPDSVHGFRCMLALKYLQLVESTYSPDTLGYDLIRDLISVIRARSYVEATRRYHHFNSRLEGTSPSDLRQLIQQPCFCLHCPRHQKTSLDKQAHESEAQMVQDVQKPRCS

NCBI Accession YP_009506423.1
Location 295-1065
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGGAGATATCATCATTTCAACTCCCGCCTCGAAGGTACGTCGCCGTCTGATCTTCGACAGCTTATACAGCAGCCGTGCTTCTGTCTTCACTGTCCGCGTCACCAAAAGACAAGCCTGGACAAACAGGCCCATGAATCGGAAGCCCAGATGGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTGGTCCATATAGGTAAGGTAATGTGCATCTCTGATGTCACTCGTGGTGTTGGGCTAACTCATCGTGTGGGTAAGAGGTTTTGCGTTAAGTCCGTTTACATCCTGGGGAAGGTATGGATGGATGAAAATATCAAGACCAAGAATCACACTAATAGCGTGATGTTCTTCCTCGTTAGGGATCGTAGGCCTGTTGATAAGCCCCAGGATTTCGGTGAGGTGTTTAACATGTTTGATAATGAACCTAGTACAGCTACTGTGAAGAACATGCATCGTGATCGCTATCAAGTCCTCAGGAAGTGGAGTGCCACTGTCACTGGTGGTCAGTATGCTAGCAAGGAGCAGGCTTTAGTTAGACGTTTTTTTAGAGTTAATAATTATGTTGTGTATAATCAGCAAGAGGCTGGCAAGTATGAAAATCATACTGAGAATGCATTGATGCTGTACATGGCGTGTACTCACGCCTCTAATCCTGTATACGCTACGCTGAAGATTAGAATCTACTTCTACGATTCGGTCAGCAATTAA
Protein Sequence MSKRPGDIIISTPASKVRRRLIFDSLYSSRASVFTVRVTKRQAWTNRPMNRKPRWYRMFRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHRVGKRFCVKSVYILGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009506424.1
Location 1062-1466
Gene Name AC3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATAGACCACAGCAGCCGGCCGTTCGGAACGACGATGGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAAATCTGGACGACCTTACGGCCTCAGACCTTGCGTTTCTTGAGGGTATTTAAGACCCACGTACTCAAATACCTGGACATGTTAGGGGTCATATGTATAAATACGGTTTTAACCGCCGTAGAACATGTATTGTACAGTGTACTCACAGGGACTGACAGTATTGAGCAGTCAAATTTAATAAAATTTAAAATTTATTAA
Protein Sequence MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFGTTMDIITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFKTHVLKYLDMLGVICINTVLTAVEHVLYSVLTGTDSIEQSNLIKFKIY

NCBI Accession YP_009506425.1
Location 1207-1614
Gene Name AC2
Protein Name transcription activator protein
Coding Region ATGCGACCTTCATCTCCCTCGACGGGCCACTCTACTCCAGTGCCGATCAAGGTTAAACACAGGGCAGCTAAGCGTAGGGCCATCCGGCGACGGAGAGTAGACCTCAACTGCGGGTGCTCGTACTACGTGCACATCAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATAGACCACAGCAGCCGGCCGTTCGGAACGACGATGGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAAATCTGGACGACCTTACGGCCTCAGACCTTGCGTTTCTTGAGGGTATTTAA
Protein Sequence MRPSSPSTGHSTPVPIKVKHRAAKRRAIRRRRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVRNDDGHNNRPDTVQPQPEESVGTTSMLDGFQNLDDLTASDLAFLEGI

NCBI Accession YP_009506426.1
Location 1559-2602
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGTCACCTCCTAAGCGTTTTATTATAAACGCCAAGAATTATTTCCTCACTTATCCCAGATGCTCTCTCTCCAAAGAAGAGACGCTTTCCCAAATTAAAAACCTAGAAACACCTACAAACCCTAAATTCATTAAAATCTGCAGAGAACTGCATGAGAATGGGGAACCTCATCTGCATGTGCTCGTCCAGTACGAGGGCAAGTTCAAATGCCAGAATAAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACTCTGGAATGGGGAGAATTCCAGGTCGACGGCAGGTCTGCACGGGGAGGCCAACAGTCGGCAAATGATGCATACGCCGCCGCAATTAACAGCGGCAGTAAGTCAGAGGCTCTTAAGATCCTTAGAGAGCTAGCTCCTAAAGACTACGTCCTGCAGTTTCATAATTTGAATGCCAATTTGGATAAAATTTTTACAACACCTGAAACTATCTATGAGAGTCCTTTTGGTCTGTCGACATTTGATCGAGTTCCAGAAGAACTCGATGTATGGTTCCATGAAAATGTCATGGATCCCGCTGCGCGGCCTTTGAGACCGAAGTCAATCGTAATCGAGGGCGATAGTCGGACAGGTAAGACTATGTGGGCTCGTGCATTGGGTCCACATAATTACCTATGTGGACATCTGGACTTGAGTCCTAGGGTCTACAGCAACGACGCGTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAAGGACTGGCAAAGCAACACCAAATACGGAAAGCCGGTTCAAATTAAAGGTGGGATACCCACTATCTTCCTGTGCAATCCTGGGCCCAATTCCAGCTATAAAGAGTTCCTTGACGAGCCGAAGAATACGGCATTGAAGGCTTGGGCAATAAGAAATGCGACCTTCATCTCCCTCGACGGGCCACTCTACTCCAGTGCCGATCAAGGTTAA
Protein Sequence MSPPKRFIINAKNYFLTYPRCSLSKEETLSQIKNLETPTNPKFIKICRELHENGEPHLHVLVQYEGKFKCQNKRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGQQSANDAYAAAINSGSKSEALKILRELAPKDYVLQFHNLNANLDKIFTTPETIYESPFGLSTFDRVPEELDVWFHENVMDPAARPLRPKSIVIEGDSRTGKTMWARALGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSSADQG

NCBI Accession YP_009506427.1
Location 2143-2445
Gene Name AC4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGTGCTCGTCCAGTACGAGGGCAAGTTCAAATGCCAGAATAAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACTCTGGAATGGGGAGAATTCCAGGTCGACGGCAGGTCTGCACGGGGAGGCCAACAGTCGGCAAATGATGCATACGCCGCCGCAATTAACAGCGGCAGTAAGTCAGAGGCTCTTAAGATCCTTAGAGAGCTAG
Protein Sequence MGNLICMCSSSTRASSNARIRDSSTWYPQPGQHISIQTFRELNPAPTSSPTSTRTEILWNGENSRSTAGLHGEANSRQMMHTPPQLTAAVSQRLLRSLES

References More References in PubMed

1

First Report of Cucumber mosaic virus on Jatropha curcas in India.

Raj SK, et al.  Plant Dis. 2008 Jan;92(1):171. doi: 10.1094/PDIS-92-1-0171C.

PMID: 30786384
2

Complete nucleotide sequence of Croton yellow vein mosaic virus and DNA-β associated with yellow vein mosaic disease of Jatropha gossypifolia in India.

Snehi SK, et al.  Virus Genes. 2011 Aug;43(1):93-101. doi: 10.1007/s11262-011-0605-9. Epub 2011 Apr 9.

PMID: 21479677
3

Mixed infection of a new begomovirus, Jatropha leaf curl Guntur virus and recombinant/chimeric jatropha leaf curl Gujarat virus in Jatropha gossypiifolia.

Gireeshbai S, et al.  Lett Appl Microbiol. 2022 Oct;75(4):1000-1009. doi: 10.1111/lam.13774. Epub 2022 Jul 2.

PMID: 35723883
4

Molecular characterization of a new begomovirus associated with leaf yellow mosaic disease of Jatropha curcas in India.

Srivastava A, et al.  Arch Virol. 2015 May;160(5):1359-62. doi: 10.1007/s00705-015-2375-5. Epub 2015 Feb 27.

PMID: 25716923
5

A new strain of Indian cassava mosaic virus causes a mosaic disease in the biodiesel crop Jatropha curcas.

Gao S, et al.  Arch Virol. 2010 Apr;155(4):607-12. doi: 10.1007/s00705-010-0625-0. Epub 2010 Mar 12.

PMID: 20224893
6

Molecular identification of a new begomovirus associated with yellow mosaic disease of Jatropha gossypifolia in India.

Snehi SK, et al.  Arch Virol. 2011 Dec;156(12):2303-7. doi: 10.1007/s00705-011-1118-5. Epub 2011 Oct 5.

PMID: 21971870
7

Characterization of a novel begomovirus associated with yellow mosaic disease of three ornamental species of Jatropha grown in India.

Srivastava A, et al.  Virus Res. 2015 Apr 2;201:41-9. doi: 10.1016/j.virusres.2015.02.015. Epub 2015 Feb 23.

PMID: 25720372
8

DNA-A of a highly pathogenic Indian cassava mosaic virus isolated from Jatropha curcas causes symptoms in Nicotiana benthamiana.

Wang G, et al.  Virus Genes. 2014 Apr;48(2):402-5. doi: 10.1007/s11262-014-1034-3. Epub 2014 Jan 21.

PMID: 24445901
9

Metabolic and histopathological alterations of Jatropha mosaic begomovirus-infected Jatropha curcas L. by HR-MAS NMR spectroscopy and magnetic resonance imaging.

Sidhu OP, et al.  Planta. 2010 Jun;232(1):85-93. doi: 10.1007/s00425-010-1159-0. Epub 2010 Apr 7.

PMID: 20372923
10

Exploitation of Hi-C sequencing for improvement of genome assembly and in-vitro validation of differentially expressing genes in Jatropha curcas L.

Jalali S, et al.  3 Biotech. 2020 Mar;10(3):91. doi: 10.1007/s13205-020-2082-0. Epub 2020 Feb 4.

PMID: 32089986