Genus | Begomovirus |
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NCBI Assembly | GCF_002822725.1 |
Isolate | India: U.P., Lucknow |
Release date | 2018/8/25 |
Submitter | Snehi,S.K., Raj,S.K., Prasad,V. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009506422.1 |
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Location | 135-491 |
Gene Name | AV2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCACTACTTAACGAGTTCCCAGACTCCGTTCACGGTTTCCGTTGTATGCTAGCGCTGAAGTACCTTCAGCTCGTCGAAAGTACTTATTCCCCTGATACGCTCGGTTACGATCTAATCCGGGACCTGATTTCTGTTATCAGGGCCAGAAGCTATGTCGAAGCGACCAGGAGATATCATCATTTCAACTCCCGCCTCGAAGGTACGTCGCCGTCTGATCTTCGACAGCTTATACAGCAGCCGTGCTTCTGTCTTCACTGTCCGCGTCACCAAAAGACAAGCCTGGACAAACAGGCCCATGAATCGGAAGCCCAGATGGTACAGGATGTTCAGAAGCCCAGATGTTCCTAG |
Protein Sequence | MWDPLLNEFPDSVHGFRCMLALKYLQLVESTYSPDTLGYDLIRDLISVIRARSYVEATRRYHHFNSRLEGTSPSDLRQLIQQPCFCLHCPRHQKTSLDKQAHESEAQMVQDVQKPRCS |
NCBI Accession | YP_009506423.1 |
---|---|
Location | 295-1065 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGGAGATATCATCATTTCAACTCCCGCCTCGAAGGTACGTCGCCGTCTGATCTTCGACAGCTTATACAGCAGCCGTGCTTCTGTCTTCACTGTCCGCGTCACCAAAAGACAAGCCTGGACAAACAGGCCCATGAATCGGAAGCCCAGATGGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTGGTCCATATAGGTAAGGTAATGTGCATCTCTGATGTCACTCGTGGTGTTGGGCTAACTCATCGTGTGGGTAAGAGGTTTTGCGTTAAGTCCGTTTACATCCTGGGGAAGGTATGGATGGATGAAAATATCAAGACCAAGAATCACACTAATAGCGTGATGTTCTTCCTCGTTAGGGATCGTAGGCCTGTTGATAAGCCCCAGGATTTCGGTGAGGTGTTTAACATGTTTGATAATGAACCTAGTACAGCTACTGTGAAGAACATGCATCGTGATCGCTATCAAGTCCTCAGGAAGTGGAGTGCCACTGTCACTGGTGGTCAGTATGCTAGCAAGGAGCAGGCTTTAGTTAGACGTTTTTTTAGAGTTAATAATTATGTTGTGTATAATCAGCAAGAGGCTGGCAAGTATGAAAATCATACTGAGAATGCATTGATGCTGTACATGGCGTGTACTCACGCCTCTAATCCTGTATACGCTACGCTGAAGATTAGAATCTACTTCTACGATTCGGTCAGCAATTAA |
Protein Sequence | MSKRPGDIIISTPASKVRRRLIFDSLYSSRASVFTVRVTKRQAWTNRPMNRKPRWYRMFRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHRVGKRFCVKSVYILGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_009506424.1 |
---|---|
Location | 1062-1466 |
Gene Name | AC3 |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATAGACCACAGCAGCCGGCCGTTCGGAACGACGATGGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAAATCTGGACGACCTTACGGCCTCAGACCTTGCGTTTCTTGAGGGTATTTAAGACCCACGTACTCAAATACCTGGACATGTTAGGGGTCATATGTATAAATACGGTTTTAACCGCCGTAGAACATGTATTGTACAGTGTACTCACAGGGACTGACAGTATTGAGCAGTCAAATTTAATAAAATTTAAAATTTATTAA |
Protein Sequence | MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFGTTMDIITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFKTHVLKYLDMLGVICINTVLTAVEHVLYSVLTGTDSIEQSNLIKFKIY |
NCBI Accession | YP_009506425.1 |
---|---|
Location | 1207-1614 |
Gene Name | AC2 |
Protein Name | transcription activator protein |
Coding Region | ATGCGACCTTCATCTCCCTCGACGGGCCACTCTACTCCAGTGCCGATCAAGGTTAAACACAGGGCAGCTAAGCGTAGGGCCATCCGGCGACGGAGAGTAGACCTCAACTGCGGGTGCTCGTACTACGTGCACATCAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATAGACCACAGCAGCCGGCCGTTCGGAACGACGATGGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAAATCTGGACGACCTTACGGCCTCAGACCTTGCGTTTCTTGAGGGTATTTAA |
Protein Sequence | MRPSSPSTGHSTPVPIKVKHRAAKRRAIRRRRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVRNDDGHNNRPDTVQPQPEESVGTTSMLDGFQNLDDLTASDLAFLEGI |
NCBI Accession | YP_009506426.1 |
---|---|
Location | 1559-2602 |
Gene Name | AC1 |
Protein Name | replication-associated protein |
Coding Region | ATGTCACCTCCTAAGCGTTTTATTATAAACGCCAAGAATTATTTCCTCACTTATCCCAGATGCTCTCTCTCCAAAGAAGAGACGCTTTCCCAAATTAAAAACCTAGAAACACCTACAAACCCTAAATTCATTAAAATCTGCAGAGAACTGCATGAGAATGGGGAACCTCATCTGCATGTGCTCGTCCAGTACGAGGGCAAGTTCAAATGCCAGAATAAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACTCTGGAATGGGGAGAATTCCAGGTCGACGGCAGGTCTGCACGGGGAGGCCAACAGTCGGCAAATGATGCATACGCCGCCGCAATTAACAGCGGCAGTAAGTCAGAGGCTCTTAAGATCCTTAGAGAGCTAGCTCCTAAAGACTACGTCCTGCAGTTTCATAATTTGAATGCCAATTTGGATAAAATTTTTACAACACCTGAAACTATCTATGAGAGTCCTTTTGGTCTGTCGACATTTGATCGAGTTCCAGAAGAACTCGATGTATGGTTCCATGAAAATGTCATGGATCCCGCTGCGCGGCCTTTGAGACCGAAGTCAATCGTAATCGAGGGCGATAGTCGGACAGGTAAGACTATGTGGGCTCGTGCATTGGGTCCACATAATTACCTATGTGGACATCTGGACTTGAGTCCTAGGGTCTACAGCAACGACGCGTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAAGGACTGGCAAAGCAACACCAAATACGGAAAGCCGGTTCAAATTAAAGGTGGGATACCCACTATCTTCCTGTGCAATCCTGGGCCCAATTCCAGCTATAAAGAGTTCCTTGACGAGCCGAAGAATACGGCATTGAAGGCTTGGGCAATAAGAAATGCGACCTTCATCTCCCTCGACGGGCCACTCTACTCCAGTGCCGATCAAGGTTAA |
Protein Sequence | MSPPKRFIINAKNYFLTYPRCSLSKEETLSQIKNLETPTNPKFIKICRELHENGEPHLHVLVQYEGKFKCQNKRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGQQSANDAYAAAINSGSKSEALKILRELAPKDYVLQFHNLNANLDKIFTTPETIYESPFGLSTFDRVPEELDVWFHENVMDPAARPLRPKSIVIEGDSRTGKTMWARALGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSSADQG |
NCBI Accession | YP_009506427.1 |
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Location | 2143-2445 |
Gene Name | AC4 |
Protein Name | C4 protein |
Coding Region | ATGGGGAACCTCATCTGCATGTGCTCGTCCAGTACGAGGGCAAGTTCAAATGCCAGAATAAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACTCTGGAATGGGGAGAATTCCAGGTCGACGGCAGGTCTGCACGGGGAGGCCAACAGTCGGCAAATGATGCATACGCCGCCGCAATTAACAGCGGCAGTAAGTCAGAGGCTCTTAAGATCCTTAGAGAGCTAG |
Protein Sequence | MGNLICMCSSSTRASSNARIRDSSTWYPQPGQHISIQTFRELNPAPTSSPTSTRTEILWNGENSRSTAGLHGEANSRQMMHTPPQLTAAVSQRLLRSLES |
1 |
First Report of Cucumber mosaic virus on Jatropha curcas in India. Raj SK, et al. Plant Dis. 2008 Jan;92(1):171. doi: 10.1094/PDIS-92-1-0171C. PMID: 30786384 |
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2 |
Snehi SK, et al. Virus Genes. 2011 Aug;43(1):93-101. doi: 10.1007/s11262-011-0605-9. Epub 2011 Apr 9. PMID: 21479677 |
3 |
Gireeshbai S, et al. Lett Appl Microbiol. 2022 Oct;75(4):1000-1009. doi: 10.1111/lam.13774. Epub 2022 Jul 2. PMID: 35723883 |
4 |
Srivastava A, et al. Arch Virol. 2015 May;160(5):1359-62. doi: 10.1007/s00705-015-2375-5. Epub 2015 Feb 27. PMID: 25716923 |
5 |
Gao S, et al. Arch Virol. 2010 Apr;155(4):607-12. doi: 10.1007/s00705-010-0625-0. Epub 2010 Mar 12. PMID: 20224893 |
6 |
Snehi SK, et al. Arch Virol. 2011 Dec;156(12):2303-7. doi: 10.1007/s00705-011-1118-5. Epub 2011 Oct 5. PMID: 21971870 |
7 |
Srivastava A, et al. Virus Res. 2015 Apr 2;201:41-9. doi: 10.1016/j.virusres.2015.02.015. Epub 2015 Feb 23. PMID: 25720372 |
8 |
Wang G, et al. Virus Genes. 2014 Apr;48(2):402-5. doi: 10.1007/s11262-014-1034-3. Epub 2014 Jan 21. PMID: 24445901 |
9 |
Sidhu OP, et al. Planta. 2010 Jun;232(1):85-93. doi: 10.1007/s00425-010-1159-0. Epub 2010 Apr 7. PMID: 20372923 |
10 |
Jalali S, et al. 3 Biotech. 2020 Mar;10(3):91. doi: 10.1007/s13205-020-2082-0. Epub 2020 Feb 4. PMID: 32089986 |