Jatropha leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000880535.1 |
| Isolate |
India |
| Release date |
2015/2/22 |
| Submitter |
Pal,A., Mukherjee,S. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAACGTGGACCCCACAACTGACAAACAGACAAAGAAAAGAAAAGGGAACCCAGCACAAAGAGAAAAAAACTAACGTCCCGCGCGCTATAAAACTTGCTGGCGAAGGAGTAGAGCCGCAACATGTGGGATCCATTAACCAACGAGTTTCCCGAAACCCTGCACGGGTTTCGCTGTATGCTTGCAGTCAAATATCTACAAGCTCTACTCTCTTCGTACGCTCCTGATACGGTCGGATACGAGTACCTTCGTGATCTGATCAGCGTACTACGCTGTCGCGACTATGGCAAAGCGTCTATTCGATATGGTCGGATCGTCGCCGCTAAGAATAACACGCCGGAAACTGAACTTCGGGAGTCCCTCCCGTCTCATTGCCAGTGCCGTCACTGCCCCAGACATGGGATTCAAAAGGAGGGCGTGGACGTGGCGACCAGCAAACCGAAAACCGTGGATATACCGGAGAAGGAGAGCTCCTGATGTGCCGCGTGGATGCGAGGGACCATGCAAAGTACAGTCATTCGAAAAGAGACATGATGTCACGCACACGGGGGGCGTTCTATGTATATCTGACGTCACACGCGGCAATGGTATCACGCATAGAGTGGGTAAGAGATTCTGCGTGAAATCCGTCTATGTACTTGGCAAGATTTGGATGGACGAGAACATCAAGACGAAGAACCATACTAACAGCGTGATATTCTGGCTGGTCAGAGACAGGCGTCCATTTGGCAGTCCAATGGACCTGGGCCAAGTCTTTAACATGTATGATAACGAGCCCAGTACAGCCACTATCAAGAACGATTTGAGGGATAGATATCAAGTGTTACACAAATGGCACGCGTCGGTTACTGGTGGTGTCTATGCGTCTAAGGAACAAGCTATAATCAAGAAGTTCTACAGAGTCAATAATTATGTGGTCTACAATCACCAGGAAGCCGCGAAATACGAAAACCATACTGAGAATGCGTTATTATTGTACATGGCATGTACGCATGCATCAAATCCAGTGTATGCAACATTGAAAATACGCATATATTTCTACGACTCAGTATCAAATTAATTAAACATTATTTCATTGCTCTGTTCAACCTGCATCGTATGATGCAGTACATTATACAATACATGATCTACAGCTTTAATTACAAGATTAATAGAAATTACACCTAATCTATCTAAATATCTAATAACTTGAGTCTTAAAGACTCGTAAGAACATCCCAGTCTGAATCCGTGAACGAGTCCAGACTTTGAAGCTCAGGAAGCACTTGTGTATCTGTAGTGCTTGCCTGAGATTGTGATTGAATTGTATTCGGAGGTGTATGATGTCCTGGTCCAGGTTGAAGGGTCTGCTCATGTGACTGATGACGCGGAAGTACAGAGGATTTGGGACCGTCCAGATAAAGACGCCATTGTTGAAACGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGATTCGCGCAGTTAGCGAGAGAAAATATGAACATCCGCACTTCAAGTCGATCCTCCTCCGCCTTATCCCCCCCTGATCTGTCGCCTCTGGCGTCTCTTGAAAGGAGCTGGAGGGGGACTGTCGCTGTCGAACACGACATTCTTAACAGCCCAGTTCTTTAATGCTGCGTTCCTATCTTCGTCTAAATACTCTTTATAGCTCGAATGGGGCCCAGGATTGCAGAGGAAGATTGTCGGAATGCCTCCTTTAACTTGAACGGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTGCTTGAGATAATGCGGATCAACATCATCAATGACGTTATACCATACGTCATTACTATAGACTCTTGGACTGAGATCCAAGTGACCGCATAAATAATTGTGTGGGCCGAGAGACCGAGCCCACATTGTCTTCCCAATACGACTATCACCCTCTAAAACAATACTTATGGGTCTAAAAGGCCGCGCAGCGGGACTGACAATATTTTCTGAGGCCCAAATCTCGAGTTCTTCTGGAACTCGATCAAACGAACAAAGAGGATAAGGAGAAACATAATCTACTCTAAGAGGTGTAAATATCTCCCTCTCTAGATTGGACTTTAAATTATGATACTGAAAAATATAATCTCTGGGCATCTTCACGGATATAGCTAGAGCAGCTTCTGCAGACCCAGAGTTTAAGGCCTCCGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAAGAACCCCCAGTCGATGAAATCTCCGTCCTTCTCGATATAGGACTTAACATCAGAGGAGGACTTAGCTCCCTGGATATTTGGATGGAATTGGGAGGAGCTATGAGGATGGATGAGATCGAAATGTCTTGCATTTCTGAATCTGGCCTTACCCTTGAACTGGATAAGGGCATGGATATGCAGTGACCCATCCTCGTGTTTCTCCTGCGCGACTCTAATAAATAATTTATCAGAAGGACAGGATATGTTTCGCAGGAGATCCAAGACTGTCTCCTTGGATAATGGGCATTTGGGATAAGTGAGGAATATGTTTTTAGCGCTAACTGAAAATGCGTTAACACGAGGCATTTTAAACAGAGGGTATTGGGGACGCTGTAAAACTCTCTACAATTGGGGACTTGGGGGACGCATTTATACCAGTGTCCCCAAATGGCACGCTTGTAATTTTTGTGAAAATCCCCTGTCCAACAGCGGCCATCCGATTAATATT
Gene Information
|
NCBI Accession
|
YP_002224028.1
|
|
Location
|
143-496 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGTGGGATCCATTAACCAACGAGTTTCCCGAAACCCTGCACGGGTTTCGCTGTATGCTTGCAGTCAAATATCTACAAGCTCTACTCTCTTCGTACGCTCCTGATACGGTCGGATACGAGTACCTTCGTGATCTGATCAGCGTACTACGCTGTCGCGACTATGGCAAAGCGTCTATTCGATATGGTCGGATCGTCGCCGCTAAGAATAACACGCCGGAAACTGAACTTCGGGAGTCCCTCCCGTCTCATTGCCAGTGCCGTCACTGCCCCAGACATGGGATTCAAAAGGAGGGCGTGGACGTGGCGACCAGCAAACCGAAAACCGTGGATATACCGGAGAAGGAGAGCTCCTGA |
|
Protein Sequence
|
MWDPLTNEFPETLHGFRCMLAVKYLQALLSSYAPDTVGYEYLRDLISVLRCRDYGKASIRYGRIVAAKNNTPETELRESLPSHCQCRHCPRHGIQKEGVDVATSKPKTVDIPEKESS |
|
NCBI Accession
|
YP_002224029.1
|
|
Location
|
303-1079 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGGCAAAGCGTCTATTCGATATGGTCGGATCGTCGCCGCTAAGAATAACACGCCGGAAACTGAACTTCGGGAGTCCCTCCCGTCTCATTGCCAGTGCCGTCACTGCCCCAGACATGGGATTCAAAAGGAGGGCGTGGACGTGGCGACCAGCAAACCGAAAACCGTGGATATACCGGAGAAGGAGAGCTCCTGATGTGCCGCGTGGATGCGAGGGACCATGCAAAGTACAGTCATTCGAAAAGAGACATGATGTCACGCACACGGGGGGCGTTCTATGTATATCTGACGTCACACGCGGCAATGGTATCACGCATAGAGTGGGTAAGAGATTCTGCGTGAAATCCGTCTATGTACTTGGCAAGATTTGGATGGACGAGAACATCAAGACGAAGAACCATACTAACAGCGTGATATTCTGGCTGGTCAGAGACAGGCGTCCATTTGGCAGTCCAATGGACCTGGGCCAAGTCTTTAACATGTATGATAACGAGCCCAGTACAGCCACTATCAAGAACGATTTGAGGGATAGATATCAAGTGTTACACAAATGGCACGCGTCGGTTACTGGTGGTGTCTATGCGTCTAAGGAACAAGCTATAATCAAGAAGTTCTACAGAGTCAATAATTATGTGGTCTACAATCACCAGGAAGCCGCGAAATACGAAAACCATACTGAGAATGCGTTATTATTGTACATGGCATGTACGCATGCATCAAATCCAGTGTATGCAACATTGAAAATACGCATATATTTCTACGACTCAGTATCAAATTAA |
|
Protein Sequence
|
MAKRLFDMVGSSPLRITRRKLNFGSPSRLIASAVTAPDMGFKRRAWTWRPANRKPWIYRRRRAPDVPRGCEGPCKVQSFEKRHDVTHTGGVLCISDVTRGNGITHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVIFWLVRDRRPFGSPMDLGQVFNMYDNEPSTATIKNDLRDRYQVLHKWHASVTGGVYASKEQAIIKKFYRVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_002224030.1
|
|
Location
|
1076-1474 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCGTTTCAACAATGGCGTCTTTATCTGGACGGTCCCAAATCCTCTGTACTTCCGCGTCATCAGTCACATGAGCAGACCCTTCAACCTGGACCAGGACATCATACACCTCCGAATACAATTCAATCACAATCTCAGGCAAGCACTACAGATACACAAGTGCTTCCTGAGCTTCAAAGTCTGGACTCGTTCACGGATTCAGACTGGGATGTTCTTACGAGTCTTTAAGACTCAAGTTATTAGATATTTAGATAGATTAGGTGTAATTTCTATTAATCTTGTAATTAAAGCTGTAGATCATGTATTGTATAATGTACTGCATCATACGATGCAGGTTGAACAGAGCAATGAAATAATGTTTAATTAA |
|
Protein Sequence
|
MDSRTGEPITAARFNNGVFIWTVPNPLYFRVISHMSRPFNLDQDIIHLRIQFNHNLRQALQIHKCFLSFKVWTRSRIQTGMFLRVFKTQVIRYLDRLGVISINLVIKAVDHVLYNVLHHTMQVEQSNEIMFN |
|
NCBI Accession
|
YP_002224031.1
|
|
Location
|
1215-1613 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGTCGTGTTCGACAGCGACAGTCCCCCTCCAGCTCCTTTCAAGAGACGCCAGAGGCGACAGATCAGGGGGGGATAAGGCGGAGGAGGATCGACTTGAAGTGCGGATGTTCATATTTTCTCTCGCTAACTGCGCGAATCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCGTTTCAACAATGGCGTCTTTATCTGGACGGTCCCAAATCCTCTGTACTTCCGCGTCATCAGTCACATGAGCAGACCCTTCAACCTGGACCAGGACATCATACACCTCCGAATACAATTCAATCACAATCTCAGGCAAGCACTACAGATACACAAGTGCTTCCTGAGCTTCAAAGTCTGGACTCGTTCACGGATTCAGACTGGGATGTTCTTACGAGTCTTTAA |
|
Protein Sequence
|
MSCSTATVPLQLLSRDARGDRSGGDKAEEDRLEVRMFIFSLANCANHGFTHRGTHHCSSFQQWRLYLDGPKSSVLPRHQSHEQTLQPGPGHHTPPNTIQSQSQASTTDTQVLPELQSLDSFTDSDWDVLTSL |
|
NCBI Accession
|
YP_002224032.1
|
|
Location
|
1537-2601 |
|
Protein Name
|
AC1 |
|
Coding Region
|
ATGCCTCGTGTTAACGCATTTTCAGTTAGCGCTAAAAACATATTCCTCACTTATCCCAAATGCCCATTATCCAAGGAGACAGTCTTGGATCTCCTGCGAAACATATCCTGTCCTTCTGATAAATTATTTATTAGAGTCGCGCAGGAGAAACACGAGGATGGGTCACTGCATATCCATGCCCTTATCCAGTTCAAGGGTAAGGCCAGATTCAGAAATGCAAGACATTTCGATCTCATCCATCCTCATAGCTCCTCCCAATTCCATCCAAATATCCAGGGAGCTAAGTCCTCCTCTGATGTTAAGTCCTATATCGAGAAGGACGGAGATTTCATCGACTGGGGGTTCTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCGGAGGCCTTAAACTCTGGGTCTGCAGAAGCTGCTCTAGCTATATCCGTGAAGATGCCCAGAGATTATATTTTTCAGTATCATAATTTAAAGTCCAATCTAGAGAGGGAGATATTTACACCTCTTAGAGTAGATTATGTTTCTCCTTATCCTCTTTGTTCGTTTGATCGAGTTCCAGAAGAACTCGAGATTTGGGCCTCAGAAAATATTGTCAGTCCCGCTGCGCGGCCTTTTAGACCCATAAGTATTGTTTTAGAGGGTGATAGTCGTATTGGGAAGACAATGTGGGCTCGGTCTCTCGGCCCACACAATTATTTATGCGGTCACTTGGATCTCAGTCCAAGAGTCTATAGTAATGACGTATGGTATAACGTCATTGATGATGTTGATCCGCATTATCTCAAGCACTTCAAGGAATTTATGGGGGCCCAGAGAGACTGGCAAAGCAACACAAAGTATGGAAAGCCCGTTCAAGTTAAAGGAGGCATTCCGACAATCTTCCTCTGCAATCCTGGGCCCCATTCGAGCTATAAAGAGTATTTAGACGAAGATAGGAACGCAGCATTAAAGAACTGGGCTGTTAAGAATGTCGTGTTCGACAGCGACAGTCCCCCTCCAGCTCCTTTCAAGAGACGCCAGAGGCGACAGATCAGGGGGGGATAA |
|
Protein Sequence
|
MPRVNAFSVSAKNIFLTYPKCPLSKETVLDLLRNISCPSDKLFIRVAQEKHEDGSLHIHALIQFKGKARFRNARHFDLIHPHSSSQFHPNIQGAKSSSDVKSYIEKDGDFIDWGFFQIDGRSARGGQQTANDAAAEALNSGSAEAALAISVKMPRDYIFQYHNLKSNLEREIFTPLRVDYVSPYPLCSFDRVPEELEIWASENIVSPAARPFRPISIVLEGDSRIGKTMWARSLGPHNYLCGHLDLSPRVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQVKGGIPTIFLCNPGPHSSYKEYLDEDRNAALKNWAVKNVVFDSDSPPPAPFKRRQRRQIRGG |
|
NCBI Accession
|
YP_002224033.1
|
|
Location
|
2187-2426 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGCCCTTATCCAGTTCAAGGGTAAGGCCAGATTCAGAAATGCAAGACATTTCGATCTCATCCATCCTCATAGCTCCTCCCAATTCCATCCAAATATCCAGGGAGCTAAGTCCTCCTCTGATGTTAAGTCCTATATCGAGAAGGACGGAGATTTCATCGACTGGGGGTTCTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCGGAGGCCTTAA |
|
Protein Sequence
|
MPLSSSRVRPDSEMQDISISSILIAPPNSIQISRELSPPLMLSPISRRTEISSTGGSFRSMEDLLEEVNRQLMMLQRRP |