Indian cassava mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000846665.1
Release date 2015/2/12
Submitter Hong,Y.G., Robinson,D.J., Harrison,B.D., Hong,Y.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_001932
TTCTCTCTCCTCAATCGGTACTCAGATAGTTTAGCCCCCATATTAGGTACTCAATATATACATGAGTACCAAATGGCATAGATGTAAATAATGGAAATATAATTTGAATTCAAAAGCGGCCATCCGTATAATATTACCGGATGGCCGCGCCCCCCTCTTTATGGTGGTCCCCCCCACGTGGATGGCCGCGCCCCCCTCTTTATGGTGGTCCCCCCCACGTGGATGGCCGCGCCCCCCGCTTTATGGTGGCCCCCCCCACGTGGAGATGTCCCCCACTCAGAACGCTCGCTCAAAGCTTGTATATGTGTGGTCCCCCTTTAAGTACTTGGGCAACAAGTCGTTGCCTGTACAATGTGGGACCCTTTACTAAACGAGTTCCCTGAGTCTGTCCACGGTTTCCGGTGTATGCTCGCCGTGAAATACCTTCAGCTGGTTGAATGTACTTATTCTCCTGATACACTCGGTTACGATTTAATTAGAGATTTGTTCTCTGTTATTAGGGCGAAGAATTATGTCGAAGCGACCAGCAGATATCATAATTTCTACTCCAGGCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATACAGCAGCCGTGCGGCTGTCCCTACTGTCCGCGTCACAAAAAGACAATCCTGGACAAACAGACCCATCAATCGGAAGCCCAGGTGGTATCGGATGTATAGAAGCCCAGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTTCGAGTCGAGACACGATGTGGTCCATATAGGTAAGGTCATGTGCATCTCTGATGTCACTCGTGGAATTGGGCTTACACATCGGGTGGGTAAGAGGTTTTGCGTTAAGTCCATTTACATCCTGGGCAAGATATGGATGGATGAAAACATTAAGACCAAGAATCACACGAATAGCGTAATGTTCTTCCTTGTAAGGGATCGTAGGCCTGTTGATAAGCCTCAGGATTTTGGTGAAGTATTTAATATGTTTGATAATGAGCCCAGTACAGCTACCGTGAAGAACATGCATCGTGATCGCTATCAAGTTCTCAGGAAGTGGCATGCCACGGTCACTGGTGGTCAGTATGCGAGCAAGGAGCAGGCTTTAGTTAGGCGTTTTTTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGGAAATATGAGAACCATACTGAGAATGCATTAATGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATACGCTACGTTGAAGATTAGAATTTATTTCTATGATTCAGTGAGCAATTAATAAATATTTAATTTTATTAAATTAGACTGCTCAACACGGTCAGTCCCATGGATTACATTGTACAATACATGCTCTACGGCTTTTACAATAGTATTAATACTTATAACTCCTAAGCTATCTAAGTATTTCAATACTTGGGTCTTAAATACCCTCAAGAAACGCCAGGTCTGAGGCTGTAAGGTCGTCCAGACCTTGAAATCCATCCAGCATTGATGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCCTGGTTCATTACGAACGGTCTGTTGTCGTGTTGAATGATCTTGAAATAGAGGGGATTTGGTACCTCCCAGATAAAGACGCCATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTAATGTGGACGTAGTACGAGCACCCGCAGTTGAGATCTACCCTTTTACGCCGGATGCGTTTACGCTTAGCAGCTCTGTGTTGGACCTTGATTGGTACCTGAGTATAGTGGTCCTTCGAGGGAGATGAAGGTCGCATTTTTCAGAGCCCAGGCTTTTAATGCGCTATTCTTTTCCTCGTCCAGGAATTCTTTATAGCTGGAATTGGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGGTGTTTGATTGCCAGTCCTCTGGGCCCCCATGAATTCTTTTGAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATTGTTGTAGACCTTAGGACTTAAATCCAGGTGTCCACATAGGTAATTATGTGGACCCAATGCACGGGACCACATGGTCTTGCCCGTCCGACTATCGCCTTCGATTACGATTGATTTTGGTCTCAAAGGCCGCGCACGACCCATCACGTTTTCGTGGAACCACTCGTCGAGTTCTTCTGGAACTCGGTCAAACGAAGAGAGAGGGAAAGGGTTCTCATATGGAGGTGGTGGTTTTGTAAAAATCCGATCCAGGTTTGAACTGATGTGATGGAAGTCCCTAAGATAATCCCTAGGTGCTAATTCTCTAAGGATCTTAAGAGCCTCTGATTTACTGCCGCTGTTAAGTGCCGCGGCGTAAGCGTCGTTTGCAGATTGTTGACCCCCTCTGGCTGATCGTCCATCGATCTGAAATGTTCCCCATCTCCAAGTATCACCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGTGATACCAGGTCGAAGAATCGCTGATTCTGGCATTTGTATTTGCCTTCGAACTGGATGAGCACGTGCAGATGAGGCTCCCCATTCTCATGTAGCTCCCTGCATATTTTGATGAATTTAGGGTTTGTAGGTGTTTGAAAGTTCCTAATTTGAGAGAGAGCCTCTTCTTTAGTTAAGGAGCATCGAGGGTAAGTGAGGAAATAGTTTTTAGCGTTTATTTGAAAGCGCTTAGGTGGTGACA
NC_001933
TTCTCTCTCCGCAATCGGTACTCAGATAGTTTAGCCCCCATATTAGGTACTCAATATATACATGAGTACCAAATGGCATAGATGTAAATAATGGGAATATAATTTGAATTGAAAAGCGGCCATCCGTATAATATTACCGGATGGCCGCGCCCCCCTCTTTATGGTGGTCCCCCCCACGTGGATGGCCGCGCCCCCCTCTTTATGGTGGTCCCCCCCACGTGGATGGCCGCGCCCCCCGCTTTATGGTGGCCCCCCCCACGTGGAGATGTCCCCCACTCAGAACGCTCGCTCAAAGCTTGTATATGTGTGGTCCCCCTTTAAGTACTTGGGCAACAAGTCGTCGCCTGTACAATGTGGGACCCTTTACTAAACGAGTTTCCTGAGTCTGTCCACGGTTTCCGGAGATCTTGCACATGGTGATTTCAGGATGAGAAGAGGTGCCTATACCCCCCGTTCTACTCCATTCCCTCGTGACCGGAGATCGTATAATGCCGGTAAGGGTAGATCATTTCGTTCGTACCGTCGTCGTGGACCTGTTCGTCCATTAGCTCGTCGGAATCTGTTTGGTGATGACCATGCACGTGCATTCACGTATAAGACCTTATCGGAGGATCAATTTGGACCGGACTTTACCATACATAATAATAATTATAAGTCATCGTATATATCTATGCCTGTTAAAACACGTGCCCTTAGCGATAACAGGGTAGGTGATTATATCAAACTTGTAAATATATCATTTACAGGTACAGTGTGTATAAAAAACAGCCAGATGGAGTCTGACGGAAGCCCAATGTTGGGCCTGCATGGGCTGTTTACTTGTGTATTGGTCCGGGATAAGACCCCCCGTATATATTCTGCCACTGAGCCTTTGATACCTTTCCCACAGTTGTTTGGGTCCATAAACGCGAGCTATGCGGATTTGTCTATACAAGACCCATATAAGGATCGGTTCACAGTTATCCGTCAGGTGTCATACCCAGTTAATACGGAGAAGGGTGATCATATGTGTCGTTTCAAAGGCACTCGTCGTTTTGGTGGTAGATACCCTATCTGGACTAGTTTTAAAGATGATGGTGGCAGTGGAGATTCATCGGGATTATATAGTAATACGTATAAAAATGCCATACTTGTATATTATGTATGGCTCAGCGACGTATCGTCACAATTGGAAATGTATTGTAAATATGTAACTCGATATATTGGTTAATAAAAATGTTATACATTTTTTGATACATGGCTCTGCATACTCGTATTTAAACATATATTTACTGTCTTGCTGATGATGTCGTTTAAGTCCTCTCGTGTGAATTGGTCCGATCCTACTTGTGATACTGACTTTCCTGGGTCCAATGCGTCTGGGTTGAGCCGGTTTAGTTGGTTGTAAGGCCTTTCAATGGATGCCCAGCCTCGCTCTTTAACGGCCCATGGCTCGTGAAGCCCAAGCTCGCTTCTAACGGCCCAGGATTCATTTGGGCCTATTGAACATGGAGCATATCTCATGGATCTGGATCCTATTAGACTTGGGCCTTGGACCAGTTTCCTCTGCTGGGCTTTCCGACCCACTGACCAGAAATCAATGTCCCTCTCAGTGAAGGCCTTGCTCAGTATCTCGATTTTGGGAGATCGGAACTGTATGTCATTAGGACTGCGTTTGCAGTTGACCAGCTTGAGTTTTCCTTGTATACGGCAGAAGTGGACCCCGTTGATGACGTTTGTGTCTACGACCCTGTACATAACCCTCCATGGGTTTATGTCCTTCATGGTAGAGAACGATGAAGAATAGTAGTGAAGGTTGCAGTTGCATTGGACGGGAATAGTAAATTCAGCCTGTTTTGAGTCTCCGTCATGCAGTCTTTGGTCGTGAATTTCAATGATGACATGTCCAGTGGCGTTAATGGGTACCTGGTTTCTATATTCTAGGACGATGTGGTCTATTTTGCAGCAGTGACCCTTGAGGAGCGATATTTTGTTATCCAGAAGAGATGGAAAGCTCAACTTGACGTCTGTTGAGTCATTGGTTAACTCATATTCAACTCTTTCGGAACGAAGATACGCTGCATTGCTACTATTATTCTCCATTGGCCCCGCAAATGCTTAAAAATTAAGCCCAGTGCAGAAGAAATAATTTAATGTGCATAAAGCAAAGCCCAAAGCGTAATAAATAGCTAAAGGCATATATATTATATTATTGATGAAAGGGTATAAGAGCATCCACGTGGCAGTGGATTAAATACATGAAAGCTATACAATATATTTAAAAATAGTTGCTGACGACGTCATCCTTCAACGAATGGAACCGGAAACCCTAATCCATCTCTGAGGACTCTGGTTAAGCCCTCTAGTAGTATGTCACATGTTTCCGGTGTCATGTGGTAGTAATTTTTGAGTTTGTAACCCCAATCTTCTATTTTGAAGGCCATATGTATGGCTCTATCTATTTCTGGTAACAGATCCATATCTTGTTCTTCGAATTGGAGGTAATAGGAATTTGAACCAGTCGCGATGTAAGATTGATGTCTGCTGATCGAATTCTTCATAATGCGACTGGATAGTCACGCACATTTCTTGCTTTGTTGCAAGAAGGAATAGTTAGTTTGGGAAGACATAGGAAGAATGAGAATGATGTTGGGTTTAAGTGGGAT

Gene Information

NCBI Accession NP_047233.1
Location 1761-2815,1
Protein Name AL1
Coding Region ATGTCACCACCTAAGCGCTTTCAAATAAACGCTAAAAACTATTTCCTCACTTACCCTCGATGCTCCTTAACTAAAGAAGAGGCTCTCTCTCAAATTAGGAACTTTCAAACACCTACAAACCCTAAATTCATCAAAATATGCAGGGAGCTACATGAGAATGGGGAGCCTCATCTGCACGTGCTCATCCAGTTCGAAGGCAAATACAAATGCCAGAATCAGCGATTCTTCGACCTGGTATCACCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGTGATACTTGGAGATGGGGAACATTTCAGATCGATGGACGATCAGCCAGAGGGGGTCAACAATCTGCAAACGACGCTTACGCCGCGGCACTTAACAGCGGCAGTAAATCAGAGGCTCTTAAGATCCTTAGAGAATTAGCACCTAGGGATTATCTTAGGGACTTCCATCACATCAGTTCAAACCTGGATCGGATTTTTACAAAACCACCACCTCCATATGAGAACCCTTTCCCTCTCTCTTCGTTTGACCGAGTTCCAGAAGAACTCGACGAGTGGTTCCACGAAAACGTGATGGGTCGTGCGCGGCCTTTGAGACCAAAATCAATCGTAATCGAAGGCGATAGTCGGACGGGCAAGACCATGTGGTCCCGTGCATTGGGTCCACATAATTACCTATGTGGACACCTGGATTTAAGTCCTAAGGTCTACAACAATGATGCATGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTCAAAAGAATTCATGGGGGCCCAGAGGACTGGCAATCAAACACCAAGTACGGTAAGCCAGTTCAAATTAAAGGAGGTATTCCCACTATCTTCCTCTGCAATCCAGGCCCCAATTCCAGCTATAAAGAATTCCTGGACGAGGAAAAGAATAGCGCATTAAAAGCCTGGGCTCTGAAAAATGCGACCTTCATCTCCCTCGAAGGACCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA
Protein Sequence MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRNFQTPTNPKFIKICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTWRWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFHHISSNLDRIFTKPPPPYENPFPLSSFDRVPEELDEWFHENVMGRARPLRPKSIVIEGDSRTGKTMWSRALGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKRIHGGPEDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEGPLYSGTNQGPTQSC

NCBI Accession NP_047227.1
Location 352-690
Protein Name AR0
Coding Region ATGTGGGACCCTTTACTAAACGAGTTCCCTGAGTCTGTCCACGGTTTCCGGTGTATGCTCGCCGTGAAATACCTTCAGCTGGTTGAATGTACTTATTCTCCTGATACACTCGGTTACGATTTAATTAGAGATTTGTTCTCTGTTATTAGGGCGAAGAATTATGTCGAAGCGACCAGCAGATATCATAATTTCTACTCCAGGCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATACAGCAGCCGTGCGGCTGTCCCTACTGTCCGCGTCACAAAAAGACAATCCTGGACAAACAGACCCATCAATCGGAAGCCCAGGTGGTATCGGATGTATAG
Protein Sequence MWDPLLNEFPESVHGFRCMLAVKYLQLVECTYSPDTLGYDLIRDLFSVIRAKNYVEATSRYHNFYSRLEGSSPSELRQPIQQPCGCPYCPRHKKTILDKQTHQSEAQVVSDV

NCBI Accession NP_047228.1
Location 472-852
Protein Name AL5
Coding Region ATGGACTTAACGCAAAACCTCTTACCCACCCGATGTGTAAGCCCAATTCCACGAGTGACATCAGAGATGCACATGACCTTACCTATATGGACCACATCGTGTCTCGACTCGAACGACTGGACCTTACATGGGCCTTCACAGCCCTTAGGAACATCTGGGCTTCTATACATCCGATACCACCTGGGCTTCCGATTGATGGGTCTGTTTGTCCAGGATTGTCTTTTTGTGACGCGGACAGTAGGGACAGCCGCACGGCTGCTGTATGGGCTGTCGAAGTTCAGACGGCGACGAACCTTCGAGCCTGGAGTAGAAATTATGATATCTGCTGGTCGCTTCGACATAATTCTTCGCCCTAATAACAGAGAACAAATCTCTAATTAA
Protein Sequence MDLTQNLLPTRCVSPIPRVTSEMHMTLPIWTTSCLDSNDWTLHGPSQPLGTSGLLYIRYHLGFRLMGLFVQDCLFVTRTVGTAARLLYGLSKFRRRRTFEPGVEIMISAGRFDIILRPNNREQISN

NCBI Accession NP_047229.1
Location 497-1060
Protein Name AL4
Coding Region ATGCCACTTCCTGAGAACTTGATAGCGATCACGATGCATGTTCTTCACGGTAGCTGTACTGGGCTCATTATCAAACATATTAAATACTTCACCAAAATCCTGAGGCTTATCAACAGGCCTACGATCCCTTACAAGGAAGAACATTACGCTATTCGTGTGATTCTTGGTCTTAATGTTTTCATCCATCCATATCTTGCCCAGGATGTAAATGGACTTAACGCAAAACCTCTTACCCACCCGATGTGTAAGCCCAATTCCACGAGTGACATCAGAGATGCACATGACCTTACCTATATGGACCACATCGTGTCTCGACTCGAACGACTGGACCTTACATGGGCCTTCACAGCCCTTAGGAACATCTGGGCTTCTATACATCCGATACCACCTGGGCTTCCGATTGATGGGTCTGTTTGTCCAGGATTGTCTTTTTGTGACGCGGACAGTAGGGACAGCCGCACGGCTGCTGTATGGGCTGTCGAAGTTCAGACGGCGACGAACCTTCGAGCCTGGAGTAGAAATTATGATATCTGCTGGTCGCTTCGACATAATTCTTCGCCCTAA
Protein Sequence MPLPENLIAITMHVLHGSCTGLIIKHIKYFTKILRLINRPTIPYKEEHYAIRVILGLNVFIHPYLAQDVNGLNAKPLTHPMCKPNSTSDIRDAHDLTYMDHIVSRLERLDLTWAFTALRNIWASIHPIPPGLPIDGSVCPGLSFCDADSRDSRTAAVWAVEVQTATNLRAWSRNYDICWSLRHNSSP

NCBI Accession NP_047230.1
Location 512-1282
Protein Name AR1
Coding Region ATGTCGAAGCGACCAGCAGATATCATAATTTCTACTCCAGGCTCGAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATACAGCAGCCGTGCGGCTGTCCCTACTGTCCGCGTCACAAAAAGACAATCCTGGACAAACAGACCCATCAATCGGAAGCCCAGGTGGTATCGGATGTATAGAAGCCCAGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCGTTCGAGTCGAGACACGATGTGGTCCATATAGGTAAGGTCATGTGCATCTCTGATGTCACTCGTGGAATTGGGCTTACACATCGGGTGGGTAAGAGGTTTTGCGTTAAGTCCATTTACATCCTGGGCAAGATATGGATGGATGAAAACATTAAGACCAAGAATCACACGAATAGCGTAATGTTCTTCCTTGTAAGGGATCGTAGGCCTGTTGATAAGCCTCAGGATTTTGGTGAAGTATTTAATATGTTTGATAATGAGCCCAGTACAGCTACCGTGAAGAACATGCATCGTGATCGCTATCAAGTTCTCAGGAAGTGGCATGCCACGGTCACTGGTGGTCAGTATGCGAGCAAGGAGCAGGCTTTAGTTAGGCGTTTTTTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGGAAATATGAGAACCATACTGAGAATGCATTAATGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATACGCTACGTTGAAGATTAGAATTTATTTCTATGATTCAGTGAGCAATTAA
Protein Sequence MSKRPADIIISTPGSKVRRRLNFDSPYSSRAAVPTVRVTKRQSWTNRPINRKPRWYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGIGLTHRVGKRFCVKSIYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession NP_047231.1
Location 1279-1683
Protein Name AL3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTTTATCTGGGAGGTACCAAATCCCCTCTATTTCAAGATCATTCAACACGACAACAGACCGTTCGTAATGAACCAGGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAGGTCTGGACGACCTTACAGCCTCAGACCTGGCGTTTCTTGAGGGTATTTAAGACCCAAGTATTGAAATACTTAGATAGCTTAGGAGTTATAAGTATTAATACTATTGTAAAAGCCGTAGAGCATGTATTGTACAATGTAATCCATGGGACTGACCGTGTTGAGCAGTCTAATTTAATAAAATTAAATATTTATTAA
Protein Sequence MDSRTGELITAAQAMNGVFIWEVPNPLYFKIIQHDNRPFVMNQDIITVQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDSLGVISINTIVKAVEHVLYNVIHGTDRVEQSNLIKLNIY

NCBI Accession NP_047232.1
Location 1424-1831
Protein Name AL2
Coding Region ATGCGACCTTCATCTCCCTCGAAGGACCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAAACGCATCCGGCGTAAAAGGGTAGATCTCAACTGCGGGTGCTCGTACTACGTCCACATTAACTGCCACAACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCGATGAATGGCGTCTTTATCTGGGAGGTACCAAATCCCCTCTATTTCAAGATCATTCAACACGACAACAGACCGTTCGTAATGAACCAGGACATAATAACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACATCAATGCTGGATGGATTTCAAGGTCTGGACGACCTTACAGCCTCAGACCTGGCGTTTCTTGAGGGTATTTAA
Protein Sequence MRPSSPSKDHYTQVPIKVQHRAAKRKRIRRKRVDLNCGCSYYVHINCHNHGFTHRGTHHCSSGDEWRLYLGGTKSPLFQDHSTRQQTVRNEPGHNNRPDTVQPQPEESVGTTSMLDGFQGLDDLTASDLAFLEGI

NCBI Accession NP_047234.1
Location 2357-2665
Protein Name AL0
Coding Region ATGAGAATGGGGAGCCTCATCTGCACGTGCTCATCCAGTTCGAAGGCAAATACAAATGCCAGAATCAGCGATTCTTCGACCTGGTATCACCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGTGATACTTGGAGATGGGGAACATTTCAGATCGATGGACGATCAGCCAGAGGGGGTCAACAATCTGCAAACGACGCTTACGCCGCGGCACTTAACAGCGGCAGTAAATCAGAGGCTCTTAAGATCCTTAGAGAATTAG
Protein Sequence MRMGSLICTCSSSSKANTNARISDSSTWYHQPGQHISIQTFRELNPAPTSSPTSTRTVILGDGEHFRSMDDQPEGVNNLQTTLTPRHLTAAVNQRLLRSLEN

NCBI Accession NP_047235.1
Location 428-1210
Gene Name br1
Protein Name BR1 protein
Coding Region ATGAGAAGAGGTGCCTATACCCCCCGTTCTACTCCATTCCCTCGTGACCGGAGATCGTATAATGCCGGTAAGGGTAGATCATTTCGTTCGTACCGTCGTCGTGGACCTGTTCGTCCATTAGCTCGTCGGAATCTGTTTGGTGATGACCATGCACGTGCATTCACGTATAAGACCTTATCGGAGGATCAATTTGGACCGGACTTTACCATACATAATAATAATTATAAGTCATCGTATATATCTATGCCTGTTAAAACACGTGCCCTTAGCGATAACAGGGTAGGTGATTATATCAAACTTGTAAATATATCATTTACAGGTACAGTGTGTATAAAAAACAGCCAGATGGAGTCTGACGGAAGCCCAATGTTGGGCCTGCATGGGCTGTTTACTTGTGTATTGGTCCGGGATAAGACCCCCCGTATATATTCTGCCACTGAGCCTTTGATACCTTTCCCACAGTTGTTTGGGTCCATAAACGCGAGCTATGCGGATTTGTCTATACAAGACCCATATAAGGATCGGTTCACAGTTATCCGTCAGGTGTCATACCCAGTTAATACGGAGAAGGGTGATCATATGTGTCGTTTCAAAGGCACTCGTCGTTTTGGTGGTAGATACCCTATCTGGACTAGTTTTAAAGATGATGGTGGCAGTGGAGATTCATCGGGATTATATAGTAATACGTATAAAAATGCCATACTTGTATATTATGTATGGCTCAGCGACGTATCGTCACAATTGGAAATGTATTGTAAATATGTAACTCGATATATTGGTTAA
Protein Sequence MRRGAYTPRSTPFPRDRRSYNAGKGRSFRSYRRRGPVRPLARRNLFGDDHARAFTYKTLSEDQFGPDFTIHNNNYKSSYISMPVKTRALSDNRVGDYIKLVNISFTGTVCIKNSQMESDGSPMLGLHGLFTCVLVRDKTPRIYSATEPLIPFPQLFGSINASYADLSIQDPYKDRFTVIRQVSYPVNTEKGDHMCRFKGTRRFGGRYPIWTSFKDDGGSGDSSGLYSNTYKNAILVYYVWLSDVSSQLEMYCKYVTRYIG

NCBI Accession NP_047236.1
Location 1219-2082
Gene Name bl1
Protein Name BL1 protein
Coding Region ATGGAGAATAATAGTAGCAATGCAGCGTATCTTCGTTCCGAAAGAGTTGAATATGAGTTAACCAATGACTCAACAGACGTCAAGTTGAGCTTTCCATCTCTTCTGGATAACAAAATATCGCTCCTCAAGGGTCACTGCTGCAAAATAGACCACATCGTCCTAGAATATAGAAACCAGGTACCCATTAACGCCACTGGACATGTCATCATTGAAATTCACGACCAAAGACTGCATGACGGAGACTCAAAACAGGCTGAATTTACTATTCCCGTCCAATGCAACTGCAACCTTCACTACTATTCTTCATCGTTCTCTACCATGAAGGACATAAACCCATGGAGGGTTATGTACAGGGTCGTAGACACAAACGTCATCAACGGGGTCCACTTCTGCCGTATACAAGGAAAACTCAAGCTGGTCAACTGCAAACGCAGTCCTAATGACATACAGTTCCGATCTCCCAAAATCGAGATACTGAGCAAGGCCTTCACTGAGAGGGACATTGATTTCTGGTCAGTGGGTCGGAAAGCCCAGCAGAGGAAACTGGTCCAAGGCCCAAGTCTAATAGGATCCAGATCCATGAGATATGCTCCATGTTCAATAGGCCCAAATGAATCCTGGGCCGTTAGAAGCGAGCTTGGGCTTCACGAGCCATGGGCCGTTAAAGAGCGAGGCTGGGCATCCATTGAAAGGCCTTACAACCAACTAAACCGGCTCAACCCAGACGCATTGGACCCAGGAAAGTCAGTATCACAAGTAGGATCGGACCAATTCACACGAGAGGACTTAAACGACATCATCAGCAAGACAGTAAATATATGTTTAAATACGAGTATGCAGAGCCATGTATCAAAAAATGTATAA
Protein Sequence MENNSSNAAYLRSERVEYELTNDSTDVKLSFPSLLDNKISLLKGHCCKIDHIVLEYRNQVPINATGHVIIEIHDQRLHDGDSKQAEFTIPVQCNCNLHYYSSSFSTMKDINPWRVMYRVVDTNVINGVHFCRIQGKLKLVNCKRSPNDIQFRSPKIEILSKAFTERDIDFWSVGRKAQQRKLVQGPSLIGSRSMRYAPCSIGPNESWAVRSELGLHEPWAVKERGWASIERPYNQLNRLNPDALDPGKSVSQVGSDQFTREDLNDIISKTVNICLNTSMQSHVSKNV

References More References in PubMed

1

Characterization of the functional domains of nuclear shuttle protein (NSP) of Indian cassava mosaic virus using green fluorescent protein as reporter.

Patil BL, et al.  Virus Genes. 2022 Aug;58(4):308-318. doi: 10.1007/s11262-022-01909-5. Epub 2022 May 14.

PMID: 35567667
2

Biolistic infection of cassava using cloned components of Indian cassava mosaic virus.

Rothenstein D, et al.  Arch Virol. 2005 Aug;150(8):1669-75. doi: 10.1007/s00705-005-0520-2. Epub 2005 Apr 14.

PMID: 15824887
3

Emergence of a Latent Indian Cassava Mosaic Virus from Cassava Which Recovered from Infection by a Non-Persistent Sri Lankan Cassava Mosaic Virus.

Karthikeyan C, et al.  Viruses. 2016 Sep 28;8(10):264. doi: 10.3390/v8100264.

PMID: 27690084
4

Molecular Studies on the Transmission of Indian Cassava Mosaic Virus (ICMV) and Sri Lankan Cassava Mosaic Virus (SLCMV) in Cassava by Bemisia tabaci and Cloning of ICMV and SLCMV Replicase Gene from Cassava.

Duraisamy R, et al.  Mol Biotechnol. 2012 Feb 3. doi: 10.1007/s12033-012-9503-1. Online ahead of print.

PMID: 22302313
5

Both Indian cassava mosaic virus and Sri Lankan cassava mosaic virus are found in India and exhibit high variability as assessed by PCR-RFLP.

Patil BL, et al.  Arch Virol. 2005 Feb;150(2):389-97. doi: 10.1007/s00705-004-0399-3. Epub 2004 Oct 20.

PMID: 15503225
6

A new strain of Indian cassava mosaic virus causes a mosaic disease in the biodiesel crop Jatropha curcas.

Gao S, et al.  Arch Virol. 2010 Apr;155(4):607-12. doi: 10.1007/s00705-010-0625-0. Epub 2010 Mar 12.

PMID: 20224893
7

Characterisation of Sri Lankan cassava mosaic virus and Indian cassava mosaic virus: evidence for acquisition of a DNA B component by a monopartite begomovirus.

Saunders K, et al.  Virology. 2002 Feb 1;293(1):63-74. doi: 10.1006/viro.2001.1251.

PMID: 11853400
8

Tissue and cell tropism of Indian cassava mosaic virus (ICMV) and its AV2 (precoat) gene product.

Rothenstein D, et al.  Virology. 2007 Mar 1;359(1):137-45. doi: 10.1016/j.virol.2006.09.014. Epub 2006 Oct 16.

PMID: 17049959
9

First Report of the Presence of East African Cassava Mosaic Virus in Cameroon.

Fondong VN, et al.  Plant Dis. 1998 Oct;82(10):1172. doi: 10.1094/PDIS.1998.82.10.1172B.

PMID: 30856787
10

The Agrobacterium tumefaciens Ti Plasmid Virulence Gene virE2 Reduces Sri Lankan Cassava Mosaic Virus Infection in Transgenic Nicotiana benthamiana Plants.

Resmi TR, et al.  Viruses. 2015 May 22;7(5):2641-53. doi: 10.3390/v7052641.

PMID: 26008704