Honeysuckle yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000859185.1
Isolate United Kingdom:Norfolk
Release date 2015/2/13
Submitter Briddon,R.W.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005807
ACCGGATGGCCGCCCGAAATTTCGTGGTGGTCCCCCCCATGTCGGCCGTGGTCCCCCCCATGTCGGCCAATGAATAACGTGCCTTGAATGTTAGATAAGTGGAAAGTGACGTTTGCTTTTGTCTTTATATACGTCAGCCCTAATTTTAACGGTGTAAGATGTGGGATCCTTTAGTTAACGATTTCCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCGGTTAAGTACCTCCTACTTGTTGAATCTACGTACGCTCCAGATACTGTTGGGTACGATCTTGTACGCGATCTTATTGGAGTTGTTCGAGCTAAGAACTATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACACCCGTCTCCAAGGTACGGCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAGGAGATCATGGGCTCAGCGGCCCATGTATCGGAAGCCCAGGATGTACAGAATGTACAGAAGTCCTGATGTTCCCAAGGGGTGTGAAGGTCCGTGTAAGGTACAGTCATTTGAGACGAAGAATGATGTTGGGCATTCTGGTACTCTGCTCTGTGTTTCTGATATCACCCGTGGTAATGGACTTACTCATCGTGTTGGGAAGAGATTTTGTATAAAATCTGTTTATATTATTGGTAAAATCTGGATGGATGACAATATTAAGACGAAGAATCACACTAACAACGTGTTATTCTGGTTAGTTAGGGATAGACGTCCTGGTTCAACTCCTTATGGATTCCAAGAGGCATTCAATATGATTCAAAATGAGCCCAGTACAGCCACTATTAAACAGGAGTTGAGAGATCGTTTGCAGGTGTTACATAGGTTCAGTGCGACTGTTACAGGTGGACAATATGTGTCCAAGGAACAAGCTATCATCAAGAGGTTCTGGAAGTTGAATCATCATGTCACTTACAATCATCAGGAGCAAGCTAAATATGAGAACCATACTGAAAATGCTTTGTTATTGTATATGGCGTGTACTCATGCCAGTAATCCAGTGTATGCCACATTAAAAATCAGAGTGTATTTCTACGATTCAGTACAAAATTAATAAAGCTTAAATTTTATATCTGTAAATTGTTGTACACATTCAGTTCCTTCGAATACATTATATAATACATGATCTACTGCTCTAATTACATTGTTAATTGATATTACACCCAAATTATCTAAGTACTTCAACACTTGTGTCCTAAATACCCTCAAGAAATGCAAAGTCTGAGGATGTAAGCGAGTCCAAATCTTGAAAGAGAGGAAGCACTTGTGTATGTGCAGTTGATTCCTGAGGTTGTGGTTGAATTGTATCTGTAAAGTTATTATATCCTGATCCATGTTGAGTGGCCGTTGCGCGTGTGTCGTGATTTTGAAATATAGGGGATTGGGCACTGTCCAGGTATACGCACCATTCCTTGCCTGAGCTGCAGTGATGGTGTCCCCTGTGCGTGAATCCATGATTTGCACACCCCAATGCGACGTAAATAGAACACCCGCAGTTCAGATCAATCCTCCTCCGGCGAGGTGCTCTCCTCTTCTCTGATCTGTGTCGCACCTTGATGGGTACCTGAGTAGAGTGGGCCGTAGAGGGTGACGAAGGCTGCATTTTTAATTGCCCAGGCTTTTAGGGCAGCATTCTTGTCCTCGTCTAAATACTCGGTGTATGATGACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAGTTATGACGTGGACTCAAAGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCCCCTTCTATCACAATGCTAATGGGCCTCCATGGCCGCGCAGCGGAATCCCTGACGTTCTCGGCAGCCCATCCCTCAAGTTGCTCTGGAACTTGATCAAATGAAGAAGATAAAAAAGGAGAAACAAATTCCTCCAACGGAGGAGCAAAAATCCTATCTAAATTGCTATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATACAGAGTGCCGATGACTTAGATCCTGAGTTGATTGCCTCGGCATACGCGTCGGTGGCAGACTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAACACTCCAAAATCAACGATGTCTCCGTCTTTCTCCATATAGGTCTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTGGGATGGAAATGTGCTGACCTGCTTGGGGATACTAGGTCGAAGAATCGTTGATTTGTGCAGTTGTATTTCCCCTCGAACTGGATGAGGACGTGGAGATGAGGGCTCCCATTTTGATGTAGCTCTCTGCAGATCCTTATGAATTTAATGTTAGTTGGTGTGTTTAATTTTTGTAATTGGGTTAGGGCTTCTTCTTTGTCGATGGAGCATTGTGGGTATGTGAGGAAATAATTTTTGGCTTTTAAAGAGAAACGCCCAGCTCTAGGCATGTTGACTTGGTCAATTGGGGGGCACTTCAAACTCCTGCTGAATGGGGGGGCATTGGGGGGCAATTTATATTCTGGGGGGCATGGCATTATTGTAATTACTTCAATTTTAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_991332.1
Location 159-509
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCTTTAGTTAACGATTTCCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCGGTTAAGTACCTCCTACTTGTTGAATCTACGTACGCTCCAGATACTGTTGGGTACGATCTTGTACGCGATCTTATTGGAGTTGTTCGAGCTAAGAACTATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACACCCGTCTCCAAGGTACGGCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAGGAGATCATGGGCTCAGCGGCCCATGTATCGGAAGCCCAGGATGTACAGAATGTACAGAAGTCCTGA
Protein Sequence MWDPLVNDFPETVHGFRCMLAVKYLLLVESTYAPDTVGYDLVRDLIGVVRAKNYVEASCRYRNFHTRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSAAHVSEAQDVQNVQKS

NCBI Accession NP_991333.1
Location 319-1092
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACACCCGTCTCCAAGGTACGGCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAGGAGATCATGGGCTCAGCGGCCCATGTATCGGAAGCCCAGGATGTACAGAATGTACAGAAGTCCTGATGTTCCCAAGGGGTGTGAAGGTCCGTGTAAGGTACAGTCATTTGAGACGAAGAATGATGTTGGGCATTCTGGTACTCTGCTCTGTGTTTCTGATATCACCCGTGGTAATGGACTTACTCATCGTGTTGGGAAGAGATTTTGTATAAAATCTGTTTATATTATTGGTAAAATCTGGATGGATGACAATATTAAGACGAAGAATCACACTAACAACGTGTTATTCTGGTTAGTTAGGGATAGACGTCCTGGTTCAACTCCTTATGGATTCCAAGAGGCATTCAATATGATTCAAAATGAGCCCAGTACAGCCACTATTAAACAGGAGTTGAGAGATCGTTTGCAGGTGTTACATAGGTTCAGTGCGACTGTTACAGGTGGACAATATGTGTCCAAGGAACAAGCTATCATCAAGAGGTTCTGGAAGTTGAATCATCATGTCACTTACAATCATCAGGAGCAAGCTAAATATGAGAACCATACTGAAAATGCTTTGTTATTGTATATGGCGTGTACTCATGCCAGTAATCCAGTGTATGCCACATTAAAAATCAGAGTGTATTTCTACGATTCAGTACAAAATTAA
Protein Sequence MSKRPADIGIFTPVSKVRRRLNFDSPYVSRASAPIALVTNKRRSWAQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFETKNDVGHSGTLLCVSDITRGNGLTHRVGKRFCIKSVYIIGKIWMDDNIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMIQNEPSTATIKQELRDRLQVLHRFSATVTGGQYVSKEQAIIKRFWKLNHHVTYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVQN

NCBI Accession NP_991334.1
Location 1089-1493
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGACACCATCACTGCAGCTCAGGCAAGGAATGGTGCGTATACCTGGACAGTGCCCAATCCCCTATATTTCAAAATCACGACACACGCGCAACGGCCACTCAACATGGATCAGGATATAATAACTTTACAGATACAATTCAACCACAACCTCAGGAATCAACTGCACATACACAAGTGCTTCCTCTCTTTCAAGATTTGGACTCGCTTACATCCTCAGACTTTGCATTTCTTGAGGGTATTTAGGACACAAGTGTTGAAGTACTTAGATAATTTGGGTGTAATATCAATTAACAATGTAATTAGAGCAGTAGATCATGTATTATATAATGTATTCGAAGGAACTGAATGTGTACAACAATTTACAGATATAAAATTTAAGCTTTATTAA
Protein Sequence MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPLNMDQDIITLQIQFNHNLRNQLHIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYLDNLGVISINNVIRAVDHVLYNVFEGTECVQQFTDIKFKLY

NCBI Accession NP_991335.1
Location 1234-1641
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGCCTTCGTCACCCTCTACGGCCCACTCTACTCAGGTACCCATCAAGGTGCGACACAGATCAGAGAAGAGGAGAGCACCTCGCCGGAGGAGGATTGATCTGAACTGCGGGTGTTCTATTTACGTCGCATTGGGGTGTGCAAATCATGGATTCACGCACAGGGGACACCATCACTGCAGCTCAGGCAAGGAATGGTGCGTATACCTGGACAGTGCCCAATCCCCTATATTTCAAAATCACGACACACGCGCAACGGCCACTCAACATGGATCAGGATATAATAACTTTACAGATACAATTCAACCACAACCTCAGGAATCAACTGCACATACACAAGTGCTTCCTCTCTTTCAAGATTTGGACTCGCTTACATCCTCAGACTTTGCATTTCTTGAGGGTATTTAG
Protein Sequence MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVALGCANHGFTHRGHHHCSSGKEWCVYLDSAQSPIFQNHDTRATATQHGSGYNNFTDTIQPQPQESTAHTQVLPLFQDLDSLTSSDFAFLEGI

NCBI Accession NP_991336.1
Location 1541-2719
Gene Name C1
Protein Name replication associated protein
Coding Region ATGCCATGCCCCCCAGAATATAAATTGCCCCCCAATGCCCCCCCATTCAGCAGGAGTTTGAAGTGCCCCCCAATTGACCAAGTCAACATGCCTAGAGCTGGGCGTTTCTCTTTAAAAGCCAAAAATTATTTCCTCACATACCCACAATGCTCCATCGACAAAGAAGAAGCCCTAACCCAATTACAAAAATTAAACACACCAACTAACATTAAATTCATAAGGATCTGCAGAGAGCTACATCAAAATGGGAGCCCTCATCTCCACGTCCTCATCCAGTTCGAGGGGAAATACAACTGCACAAATCAACGATTCTTCGACCTAGTATCCCCAAGCAGGTCAGCACATTTCCATCCCAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGACCTATATGGAGAAAGACGGAGACATCGTTGATTTTGGAGTGTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCCACCGACGCGTATGCCGAGGCAATCAACTCAGGATCTAAGTCATCGGCACTCTGTATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATAGCAATTTAGATAGGATTTTTGCTCCTCCGTTGGAGGAATTTGTTTCTCCTTTTTTATCTTCTTCATTTGATCAAGTTCCAGAGCAACTTGAGGGATGGGCTGCCGAGAACGTCAGGGATTCCGCTGCGCGGCCATGGAGGCCCATTAGCATTGTGATAGAAGGGGATAGCAGGACAGGGAAGACCATGTGGGCCAGGTCTTTGAGTCCACGTCATAACTACCTTTGCGGCCATCTTGACTTAAGCCCCAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTGGATCCCCACTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACGTCATCATACACCGAGTATTTAGACGAGGACAAGAATGCTGCCCTAAAAGCCTGGGCAATTAAAAATGCAGCCTTCGTCACCCTCTACGGCCCACTCTACTCAGGTACCCATCAAGGTGCGACACAGATCAGAGAAGAGGAGAGCACCTCGCCGGAGGAGGATTGA
Protein Sequence MPCPPEYKLPPNAPPFSRSLKCPPIDQVNMPRAGRFSLKAKNYFLTYPQCSIDKEEALTQLQKLNTPTNIKFIRICRELHQNGSPHLHVLIQFEGKYNCTNQRFFDLVSPSRSAHFHPNIQAAKSSSDVKTYMEKDGDIVDFGVFQVDGRSARGGCQSATDAYAEAINSGSKSSALCILREKAPKDFVLQFHNLNSNLDRIFAPPLEEFVSPFLSSSFDQVPEQLEGWAAENVRDSAARPWRPISIVIEGDSRTGKTMWARSLSPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNAAFVTLYGPLYSGTHQGATQIREEESTSPEED

NCBI Accession NP_991337.1
Location 2182-2337
Gene Name C4
Protein Name C4 protein
Coding Region ATGTCAAGACCTATATGGAGAAAGACGGAGACATCGTTGATTTTGGAGTGTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCCACCGACGCGTATGCCGAGGCAATCAACTCAGGATCTAAGTCATCGGCACTCTGTATATTAA
Protein Sequence MSRPIWRKTETSLILECSRSMEDQLEEVASLPPTRMPRQSTQDLSHRHSVY

References More References in PubMed

1

The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf curl Japan virus with DNAbeta satellites cause yellow dwarf disease of tomato.

Ogawa T, et al.  Virus Res. 2008 Nov;137(2):235-44. doi: 10.1016/j.virusres.2008.07.021. Epub 2008 Sep 13.

PMID: 18722488
2

Evidence for recombination among isolates of Tobacco leaf curl Japan virus and Honeysuckle yellow vein mosaic virus.

Kitamura K, et al.  Arch Virol. 2004 Jun;149(6):1221-9. doi: 10.1007/s00705-003-0276-5. Epub 2004 Feb 16.

PMID: 15168208
3

Agroinoculation of Nicotiana benthamiana with cloned honeysuckle yellow vein virus isolated from Lonicera japonica.

Lee G, et al.  Arch Virol. 2011 May;156(5):785-91. doi: 10.1007/s00705-011-0916-0. Epub 2011 Jan 30.

PMID: 21279729
4

Replication promiscuity of DNA-beta satellites associated with monopartite begomoviruses; deletion mutagenesis of the Ageratum yellow vein virus DNA-beta satellite localizes sequences involved in replication.

Saunders K, et al.  J Gen Virol. 2008 Dec;89(Pt 12):3165-3172. doi: 10.1099/vir.0.2008/003848-0.

PMID: 19008407
5

A Novel Geminivirus of Ipomoea indica (Convolvulacae) from Southern Spain.

Banks GK, et al.  Plant Dis. 1999 May;83(5):486. doi: 10.1094/PDIS.1999.83.5.486B.

PMID: 30845545
6

Interaction of tomato yellow leaf curl virus with diverse betasatellites enhances symptom severity.

Ito T, et al.  Arch Virol. 2009;154(8):1233-9. doi: 10.1007/s00705-009-0431-8. Epub 2009 Jul 3.

PMID: 19575277
7

High production of recombinant protein using geminivirus-based deconstructed vectors in Nicotiana benthamiana.

Kim NS, et al.  Front Plant Sci. 2024 Jul 23;15:1407240. doi: 10.3389/fpls.2024.1407240. eCollection 2024.

PMID: 39109056
8

Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation.

Park J, et al.  Virus Res. 2011 Aug;159(2):124-31. doi: 10.1016/j.virusres.2011.04.017. Epub 2011 Apr 28.

PMID: 21549772
9

Efficient production of functional cholera toxin B subunit using geminiviral replicons in Nicotiana benthamiana.

Kim NS, et al.  Front Bioeng Biotechnol. 2025 Nov 14;13:1693569. doi: 10.3389/fbioe.2025.1693569. eCollection 2025.

PMID: 41323469
10

Commodity risk assessment of Lonicera ligustrina var. pileata, Lonicera ligustrina var. yunnanensis and Lonicera periclymenum plants from the UK.

EFSA Panel on Plant Health (PLH), et al.  EFSA J. 2026 Jan 7;24(1):e9805. doi: 10.2903/j.efsa.2026.9805. eCollection 2026 Jan.

PMID: 41510362