Honeysuckle yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000859185.1
Isolate United Kingdom:Norfolk
Release date 2015/2/13
Submitter Briddon,R.W.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005807
ACCGGATGGCCGCCCGAAATTTCGTGGTGGTCCCCCCCATGTCGGCCGTGGTCCCCCCCATGTCGGCCAATGAATAACGTGCCTTGAATGTTAGATAAGTGGAAAGTGACGTTTGCTTTTGTCTTTATATACGTCAGCCCTAATTTTAACGGTGTAAGATGTGGGATCCTTTAGTTAACGATTTCCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCGGTTAAGTACCTCCTACTTGTTGAATCTACGTACGCTCCAGATACTGTTGGGTACGATCTTGTACGCGATCTTATTGGAGTTGTTCGAGCTAAGAACTATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACACCCGTCTCCAAGGTACGGCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAGGAGATCATGGGCTCAGCGGCCCATGTATCGGAAGCCCAGGATGTACAGAATGTACAGAAGTCCTGATGTTCCCAAGGGGTGTGAAGGTCCGTGTAAGGTACAGTCATTTGAGACGAAGAATGATGTTGGGCATTCTGGTACTCTGCTCTGTGTTTCTGATATCACCCGTGGTAATGGACTTACTCATCGTGTTGGGAAGAGATTTTGTATAAAATCTGTTTATATTATTGGTAAAATCTGGATGGATGACAATATTAAGACGAAGAATCACACTAACAACGTGTTATTCTGGTTAGTTAGGGATAGACGTCCTGGTTCAACTCCTTATGGATTCCAAGAGGCATTCAATATGATTCAAAATGAGCCCAGTACAGCCACTATTAAACAGGAGTTGAGAGATCGTTTGCAGGTGTTACATAGGTTCAGTGCGACTGTTACAGGTGGACAATATGTGTCCAAGGAACAAGCTATCATCAAGAGGTTCTGGAAGTTGAATCATCATGTCACTTACAATCATCAGGAGCAAGCTAAATATGAGAACCATACTGAAAATGCTTTGTTATTGTATATGGCGTGTACTCATGCCAGTAATCCAGTGTATGCCACATTAAAAATCAGAGTGTATTTCTACGATTCAGTACAAAATTAATAAAGCTTAAATTTTATATCTGTAAATTGTTGTACACATTCAGTTCCTTCGAATACATTATATAATACATGATCTACTGCTCTAATTACATTGTTAATTGATATTACACCCAAATTATCTAAGTACTTCAACACTTGTGTCCTAAATACCCTCAAGAAATGCAAAGTCTGAGGATGTAAGCGAGTCCAAATCTTGAAAGAGAGGAAGCACTTGTGTATGTGCAGTTGATTCCTGAGGTTGTGGTTGAATTGTATCTGTAAAGTTATTATATCCTGATCCATGTTGAGTGGCCGTTGCGCGTGTGTCGTGATTTTGAAATATAGGGGATTGGGCACTGTCCAGGTATACGCACCATTCCTTGCCTGAGCTGCAGTGATGGTGTCCCCTGTGCGTGAATCCATGATTTGCACACCCCAATGCGACGTAAATAGAACACCCGCAGTTCAGATCAATCCTCCTCCGGCGAGGTGCTCTCCTCTTCTCTGATCTGTGTCGCACCTTGATGGGTACCTGAGTAGAGTGGGCCGTAGAGGGTGACGAAGGCTGCATTTTTAATTGCCCAGGCTTTTAGGGCAGCATTCTTGTCCTCGTCTAAATACTCGGTGTATGATGACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAGTTATGACGTGGACTCAAAGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCCCCTTCTATCACAATGCTAATGGGCCTCCATGGCCGCGCAGCGGAATCCCTGACGTTCTCGGCAGCCCATCCCTCAAGTTGCTCTGGAACTTGATCAAATGAAGAAGATAAAAAAGGAGAAACAAATTCCTCCAACGGAGGAGCAAAAATCCTATCTAAATTGCTATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATACAGAGTGCCGATGACTTAGATCCTGAGTTGATTGCCTCGGCATACGCGTCGGTGGCAGACTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAACACTCCAAAATCAACGATGTCTCCGTCTTTCTCCATATAGGTCTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTGGGATGGAAATGTGCTGACCTGCTTGGGGATACTAGGTCGAAGAATCGTTGATTTGTGCAGTTGTATTTCCCCTCGAACTGGATGAGGACGTGGAGATGAGGGCTCCCATTTTGATGTAGCTCTCTGCAGATCCTTATGAATTTAATGTTAGTTGGTGTGTTTAATTTTTGTAATTGGGTTAGGGCTTCTTCTTTGTCGATGGAGCATTGTGGGTATGTGAGGAAATAATTTTTGGCTTTTAAAGAGAAACGCCCAGCTCTAGGCATGTTGACTTGGTCAATTGGGGGGCACTTCAAACTCCTGCTGAATGGGGGGGCATTGGGGGGCAATTTATATTCTGGGGGGCATGGCATTATTGTAATTACTTCAATTTTAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_991332.1
Location 159-509
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCTTTAGTTAACGATTTCCCTGAAACCGTTCACGGTTTTAGGTGTATGTTAGCGGTTAAGTACCTCCTACTTGTTGAATCTACGTACGCTCCAGATACTGTTGGGTACGATCTTGTACGCGATCTTATTGGAGTTGTTCGAGCTAAGAACTATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACACCCGTCTCCAAGGTACGGCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAGGAGATCATGGGCTCAGCGGCCCATGTATCGGAAGCCCAGGATGTACAGAATGTACAGAAGTCCTGA
Protein Sequence MWDPLVNDFPETVHGFRCMLAVKYLLLVESTYAPDTVGYDLVRDLIGVVRAKNYVEASCRYRNFHTRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSAAHVSEAQDVQNVQKS

NCBI Accession NP_991333.1
Location 319-1092
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACACCCGTCTCCAAGGTACGGCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAGGAGATCATGGGCTCAGCGGCCCATGTATCGGAAGCCCAGGATGTACAGAATGTACAGAAGTCCTGATGTTCCCAAGGGGTGTGAAGGTCCGTGTAAGGTACAGTCATTTGAGACGAAGAATGATGTTGGGCATTCTGGTACTCTGCTCTGTGTTTCTGATATCACCCGTGGTAATGGACTTACTCATCGTGTTGGGAAGAGATTTTGTATAAAATCTGTTTATATTATTGGTAAAATCTGGATGGATGACAATATTAAGACGAAGAATCACACTAACAACGTGTTATTCTGGTTAGTTAGGGATAGACGTCCTGGTTCAACTCCTTATGGATTCCAAGAGGCATTCAATATGATTCAAAATGAGCCCAGTACAGCCACTATTAAACAGGAGTTGAGAGATCGTTTGCAGGTGTTACATAGGTTCAGTGCGACTGTTACAGGTGGACAATATGTGTCCAAGGAACAAGCTATCATCAAGAGGTTCTGGAAGTTGAATCATCATGTCACTTACAATCATCAGGAGCAAGCTAAATATGAGAACCATACTGAAAATGCTTTGTTATTGTATATGGCGTGTACTCATGCCAGTAATCCAGTGTATGCCACATTAAAAATCAGAGTGTATTTCTACGATTCAGTACAAAATTAA
Protein Sequence MSKRPADIGIFTPVSKVRRRLNFDSPYVSRASAPIALVTNKRRSWAQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFETKNDVGHSGTLLCVSDITRGNGLTHRVGKRFCIKSVYIIGKIWMDDNIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMIQNEPSTATIKQELRDRLQVLHRFSATVTGGQYVSKEQAIIKRFWKLNHHVTYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVQN

NCBI Accession NP_991334.1
Location 1089-1493
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGACACCATCACTGCAGCTCAGGCAAGGAATGGTGCGTATACCTGGACAGTGCCCAATCCCCTATATTTCAAAATCACGACACACGCGCAACGGCCACTCAACATGGATCAGGATATAATAACTTTACAGATACAATTCAACCACAACCTCAGGAATCAACTGCACATACACAAGTGCTTCCTCTCTTTCAAGATTTGGACTCGCTTACATCCTCAGACTTTGCATTTCTTGAGGGTATTTAGGACACAAGTGTTGAAGTACTTAGATAATTTGGGTGTAATATCAATTAACAATGTAATTAGAGCAGTAGATCATGTATTATATAATGTATTCGAAGGAACTGAATGTGTACAACAATTTACAGATATAAAATTTAAGCTTTATTAA
Protein Sequence MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPLNMDQDIITLQIQFNHNLRNQLHIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYLDNLGVISINNVIRAVDHVLYNVFEGTECVQQFTDIKFKLY

NCBI Accession NP_991335.1
Location 1234-1641
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGCCTTCGTCACCCTCTACGGCCCACTCTACTCAGGTACCCATCAAGGTGCGACACAGATCAGAGAAGAGGAGAGCACCTCGCCGGAGGAGGATTGATCTGAACTGCGGGTGTTCTATTTACGTCGCATTGGGGTGTGCAAATCATGGATTCACGCACAGGGGACACCATCACTGCAGCTCAGGCAAGGAATGGTGCGTATACCTGGACAGTGCCCAATCCCCTATATTTCAAAATCACGACACACGCGCAACGGCCACTCAACATGGATCAGGATATAATAACTTTACAGATACAATTCAACCACAACCTCAGGAATCAACTGCACATACACAAGTGCTTCCTCTCTTTCAAGATTTGGACTCGCTTACATCCTCAGACTTTGCATTTCTTGAGGGTATTTAG
Protein Sequence MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVALGCANHGFTHRGHHHCSSGKEWCVYLDSAQSPIFQNHDTRATATQHGSGYNNFTDTIQPQPQESTAHTQVLPLFQDLDSLTSSDFAFLEGI

NCBI Accession NP_991336.1
Location 1541-2719
Gene Name C1
Protein Name replication associated protein
Coding Region ATGCCATGCCCCCCAGAATATAAATTGCCCCCCAATGCCCCCCCATTCAGCAGGAGTTTGAAGTGCCCCCCAATTGACCAAGTCAACATGCCTAGAGCTGGGCGTTTCTCTTTAAAAGCCAAAAATTATTTCCTCACATACCCACAATGCTCCATCGACAAAGAAGAAGCCCTAACCCAATTACAAAAATTAAACACACCAACTAACATTAAATTCATAAGGATCTGCAGAGAGCTACATCAAAATGGGAGCCCTCATCTCCACGTCCTCATCCAGTTCGAGGGGAAATACAACTGCACAAATCAACGATTCTTCGACCTAGTATCCCCAAGCAGGTCAGCACATTTCCATCCCAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGACCTATATGGAGAAAGACGGAGACATCGTTGATTTTGGAGTGTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCCACCGACGCGTATGCCGAGGCAATCAACTCAGGATCTAAGTCATCGGCACTCTGTATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATAGCAATTTAGATAGGATTTTTGCTCCTCCGTTGGAGGAATTTGTTTCTCCTTTTTTATCTTCTTCATTTGATCAAGTTCCAGAGCAACTTGAGGGATGGGCTGCCGAGAACGTCAGGGATTCCGCTGCGCGGCCATGGAGGCCCATTAGCATTGTGATAGAAGGGGATAGCAGGACAGGGAAGACCATGTGGGCCAGGTCTTTGAGTCCACGTCATAACTACCTTTGCGGCCATCTTGACTTAAGCCCCAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTGGATCCCCACTATCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACGTCATCATACACCGAGTATTTAGACGAGGACAAGAATGCTGCCCTAAAAGCCTGGGCAATTAAAAATGCAGCCTTCGTCACCCTCTACGGCCCACTCTACTCAGGTACCCATCAAGGTGCGACACAGATCAGAGAAGAGGAGAGCACCTCGCCGGAGGAGGATTGA
Protein Sequence MPCPPEYKLPPNAPPFSRSLKCPPIDQVNMPRAGRFSLKAKNYFLTYPQCSIDKEEALTQLQKLNTPTNIKFIRICRELHQNGSPHLHVLIQFEGKYNCTNQRFFDLVSPSRSAHFHPNIQAAKSSSDVKTYMEKDGDIVDFGVFQVDGRSARGGCQSATDAYAEAINSGSKSSALCILREKAPKDFVLQFHNLNSNLDRIFAPPLEEFVSPFLSSSFDQVPEQLEGWAAENVRDSAARPWRPISIVIEGDSRTGKTMWARSLSPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNAAFVTLYGPLYSGTHQGATQIREEESTSPEED

NCBI Accession NP_991337.1
Location 2182-2337
Gene Name C4
Protein Name C4 protein
Coding Region ATGTCAAGACCTATATGGAGAAAGACGGAGACATCGTTGATTTTGGAGTGTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCCACCGACGCGTATGCCGAGGCAATCAACTCAGGATCTAAGTCATCGGCACTCTGTATATTAA
Protein Sequence MSRPIWRKTETSLILECSRSMEDQLEEVASLPPTRMPRQSTQDLSHRHSVY

References More References in PubMed

1

The begomoviruses Honeysuckle yellow vein mosaic virus and Tobacco leaf curl Japan virus with DNAbeta satellites cause yellow dwarf disease of tomato.

Ogawa T, et al.  Virus Res. 2008 Nov;137(2):235-44. doi: 10.1016/j.virusres.2008.07.021. Epub 2008 Sep 13.

PMID: 18722488
2

Agroinoculation of Nicotiana benthamiana with cloned honeysuckle yellow vein virus isolated from Lonicera japonica.

Lee G, et al.  Arch Virol. 2011 May;156(5):785-91. doi: 10.1007/s00705-011-0916-0. Epub 2011 Jan 30.

PMID: 21279729
3

Evidence for recombination among isolates of Tobacco leaf curl Japan virus and Honeysuckle yellow vein mosaic virus.

Kitamura K, et al.  Arch Virol. 2004 Jun;149(6):1221-9. doi: 10.1007/s00705-003-0276-5. Epub 2004 Feb 16.

PMID: 15168208
4

Replication promiscuity of DNA-beta satellites associated with monopartite begomoviruses; deletion mutagenesis of the Ageratum yellow vein virus DNA-beta satellite localizes sequences involved in replication.

Saunders K, et al.  J Gen Virol. 2008 Dec;89(Pt 12):3165-3172. doi: 10.1099/vir.0.2008/003848-0.

PMID: 19008407
5

Interaction of tomato yellow leaf curl virus with diverse betasatellites enhances symptom severity.

Ito T, et al.  Arch Virol. 2009;154(8):1233-9. doi: 10.1007/s00705-009-0431-8. Epub 2009 Jul 3.

PMID: 19575277
6

A Novel Geminivirus of Ipomoea indica (Convolvulacae) from Southern Spain.

Banks GK, et al.  Plant Dis. 1999 May;83(5):486. doi: 10.1094/PDIS.1999.83.5.486B.

PMID: 30845545
7

Phylogenetic lineage of Tobacco leaf curl virus in Korea and estimation of recombination events implicated in their sequence variation.

Park J, et al.  Virus Res. 2011 Aug;159(2):124-31. doi: 10.1016/j.virusres.2011.04.017. Epub 2011 Apr 28.

PMID: 21549772
8

Unique grouping of the Far East Asian begomovirus complex based on sequence analyses of the DNA-A genome and associated DNAbeta satellite molecules isolated from tomato, honeysuckle and Eupatorium plants in Japan.

Ueda S, et al.  Arch Virol. 2008;153(3):417-26. doi: 10.1007/s00705-007-0011-8. Epub 2008 Jan 4.

PMID: 18175045