Hollyhock yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_013088155.1
Isolate India
Release date 2021/6/1
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055499
ACCGGATGGCCGCGAAAAATTTTGGGTGGGTCCTCGACCAATGAAATTGCGCGCTCAGAGCTTAAATAATTATCCCGCGCCTATAAGTACTTCGGCGCTAAGTTTCTATTTCAAAAAATGTGGGATCCACTTTTAAACGAGTTCCCTGATACGGTTTACGGTTTTCGGTGTATGCTTTCTGTCAAATACTTGCAGCTATTGTCTGAAGGATACTCTCCGGATACGGTTGGGTACGAGTTAATTCGCGATCTAATTACTATTGTCCGATCCCGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACACCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGACAGCCCTTACGCGACCCGTGCTGGTGTCCCCACTGTCCGCGTCACAAAGTCAAGGCTATGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAGGGTCCATGTAAGGTACAGTCATTTGAGTCCAGACACGATGTAGTCCATATAGGTAAAGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGCTGACCCATAGAGTTGGGAAACGGTTTTGTGTGAAGTCAGTCTATGTATTGGGTAAGATCTGGATGGATGAAAATATAAAGTCCAAGAATCATACTAACAATGTGATGTTCTTCCTCGTTCGAGATCGACGTCCCACCGGCACGCCTCAAGATTTTGGAGATGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATGTCCATCGGGATCGTTACCAGGTCTTGAGGAAATGGTATGCAACTGTCACTGGTGGACAGTATGGTGCAAAGGAACAGGCTTTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTACAACCAGCAAGAGGCAGGGAAATACGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCGACTCTTAAGATTAGGATCTACTTTTATGACTCTGTAACGAATTGAAATTAATATAATTTGAATTTTATTTCTGAAAGTTGTTGCACTTCTACAGTATGAGCAATTACATTCCACAATACATGATTTATTGCCCTAATTACAAAATTAAGTGAAATTACACCTAGATTGTTGAGATACTTGAGGACTTGGGTTCGGAATACTCTTAAGAAAAGACCAATCGGAGGGTGTAAGGTCGTCCAGATTCGGTAGGTCAGAAAACCCTTGTGCATCCCCAGTGCTTTCCTCAGGTTGTGATTGAACTGGATCCTGATGGTGATTATCGTCATTCTCGATGTTGATGGAGCCTCGTAGTGGCTTAGGATCTTGAAATAAAGGGGATTTGGTACGTCCCAGATATACACGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGATCGTGGCAGTTGATGGATAGGTAATATGAACAGCCGCAATCAAGATCCACTCTCCTCCGTCTGATCCTCTTCTTGGCCTCTCTGTGTTGGACTTTGATCGGCACTTGAGTATAGTGGTTCCTCGAGGGTGAAGAAGAGTGCATTTTTAATAGCCCAGTTTTTTAGGGCTTGGTTCTTCTCCTCGTCCAGGTACTCTTTATACGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAACTGGCTTCCCGTATTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAGTGCGGATCGACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGACTTTAGGGCTCAGATCTAAATGGCCACAAAGATAATTATGTGGTCCTAATGACCGTGCCCACATCGTTTTGCCCGTACGACTGTCTCCCTCTAACACTAAACTCAAAGGACGCAGAGGCCGCGCAGCGGCGTCCATGACGTTTTCCGATACCCATTCCTCAAGTTCTTCTGGAACTTGATTGAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAAGGGAGGTGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACATAATCTTTGGGAGCTAACTCCCTAAGTACTCTAAGAGCCTCTGGCTTACTGCCGGTGTTAAGTGCCTGGGCGTAAGCATCATTTGCTGTCTGTTGTCCTCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTATTGACCTGCTTGGGGACACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAGATTTTGATGAATTTTTTATTTGTTGGGGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCCTCTTTTGTAAGAGAGCATTTCGGATAAGTGAGGAAATAATTTTTGGAATTAATAAGAAAACGCTTTGGAGGCATTTTGACCAAATAGAGGACCCGATTGACCAGCTCTTGCAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGATACCCAAATGGCATTGTGGTAATTTCGAGAAGAAATTCAAAACTCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_010086869.1
Location 118-465
Gene Name AV2
Protein Name movement protein
Coding Region ATGTGGGATCCACTTTTAAACGAGTTCCCTGATACGGTTTACGGTTTTCGGTGTATGCTTTCTGTCAAATACTTGCAGCTATTGTCTGAAGGATACTCTCCGGATACGGTTGGGTACGAGTTAATTCGCGATCTAATTACTATTGTCCGATCCCGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACACCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGACAGCCCTTACGCGACCCGTGCTGGTGTCCCCACTGTCCGCGTCACAAAGTCAAGGCTATGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDTVYGFRCMLSVKYLQLLSEGYSPDTVGYELIRDLITIVRSRNYVEASCRYRNFYTRVESTPASELRQPLRDPCWCPHCPRHKVKAMGEQAHESEAQNVQNVQKP

NCBI Accession YP_010086870.1
Location 278-1048
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACACCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGACAGCCCTTACGCGACCCGTGCTGGTGTCCCCACTGTCCGCGTCACAAAGTCAAGGCTATGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAGGGTCCATGTAAGGTACAGTCATTTGAGTCCAGACACGATGTAGTCCATATAGGTAAAGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGCTGACCCATAGAGTTGGGAAACGGTTTTGTGTGAAGTCAGTCTATGTATTGGGTAAGATCTGGATGGATGAAAATATAAAGTCCAAGAATCATACTAACAATGTGATGTTCTTCCTCGTTCGAGATCGACGTCCCACCGGCACGCCTCAAGATTTTGGAGATGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATGTCCATCGGGATCGTTACCAGGTCTTGAGGAAATGGTATGCAACTGTCACTGGTGGACAGTATGGTGCAAAGGAACAGGCTTTAGTTAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTACAACCAGCAAGAGGCAGGGAAATACGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCGACTCTTAAGATTAGGATCTACTTTTATGACTCTGTAACGAATTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYATRAGVPTVRVTKSRLWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPTGTPQDFGDVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010086871.1
Location 1051-1455
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGTGTATATCTGGGACGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACTACGAGGCTCCATCAACATCGAGAATGACGATAATCACCATCAGGATCCAGTTCAATCACAACCTGAGGAAAGCACTGGGGATGCACAAGGGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGATTGGTCTTTTCTTAAGAGTATTCCGAACCCAAGTCCTCAAGTATCTCAACAATCTAGGTGTAATTTCACTTAATTTTGTAATTAGGGCAATAAATCATGTATTGTGGAATGTAATTGCTCATACTGTAGAAGTGCAACAACTTTCAGAAATAAAATTCAAATTATATTAA
Protein Sequence MDSRTGEPITAAQAWNGVYIWDVPNPLYFKILSHYEAPSTSRMTIITIRIQFNHNLRKALGMHKGFLTYRIWTTLHPPIGLFLRVFRTQVLKYLNNLGVISLNFVIRAINHVLWNVIAHTVEVQQLSEIKFKLY

NCBI Accession YP_010086872.1
Location 1148-1600
Gene Name AC2
Protein Name transcription activator protein
Coding Region ATGCACTCTTCTTCACCCTCGAGGAACCACTATACTCAAGTGCCGATCAAAGTCCAACACAGAGAGGCCAAGAAGAGGATCAGACGGAGGAGAGTGGATCTTGATTGCGGCTGTTCATATTACCTATCCATCAACTGCCACGATCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGTGTATATCTGGGACGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACTACGAGGCTCCATCAACATCGAGAATGACGATAATCACCATCAGGATCCAGTTCAATCACAACCTGAGGAAAGCACTGGGGATGCACAAGGGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGATTGGTCTTTTCTTAAGAGTATTCCGAACCCAAGTCCTCAAGTATCTCAACAATCTAGGTGTAATTTCACTTAA
Protein Sequence MHSSSPSRNHYTQVPIKVQHREAKKRIRRRRVDLDCGCSYYLSINCHDHGFTHRGTHHCSSSMEWRVYLGRTKSPLFQDPKPLRGSINIENDDNHHQDPVQSQPEESTGDAQGFSDLPNLDDLTPSDWSFLKSIPNPSPQVSQQSRCNFT

NCBI Accession YP_010086873.1
Location 1497-2585
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCTCCAAAGCGTTTTCTTATTAATTCCAAAAATTATTTCCTCACTTATCCGAAATGCTCTCTTACAAAAGAGGAAGCACTTTCCCAACTTCAAAACCTACAAACCCCAACAAATAAAAAATTCATCAAAATCTGCAAAGAGCTTCACGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTGTCCCCAAGCAGGTCAATACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAGACAGCAAATGATGCTTACGCCCAGGCACTTAACACCGGCAGTAAGCCAGAGGCTCTTAGAGTACTTAGGGAGTTAGCTCCCAAAGATTATGTTTTACAATTTCATAATTTAAATGCCAATTTAGATAGGATTTTTACACCTCCCTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTCAATCAAGTTCCAGAAGAACTTGAGGAATGGGTATCGGAAAACGTCATGGACGCCGCTGCGCGGCCTCTGCGTCCTTTGAGTTTAGTGTTAGAGGGAGACAGTCGTACGGGCAAAACGATGTGGGCACGGTCATTAGGACCACATAATTATCTTTGTGGCCATTTAGATCTGAGCCCTAAAGTCTACAGCAACGACGCGTGGTACAACGTCATTGATGACGTCGATCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAACACGAAATACGGGAAGCCAGTTCAAATTAAAGGTGGGATCCCAACAATCTTCCTCTGCAATCCTGGGCCAAACTCATCGTATAAAGAGTACCTGGACGAGGAGAAGAACCAAGCCCTAAAAAACTGGGCTATTAAAAATGCACTCTTCTTCACCCTCGAGGAACCACTATACTCAAGTGCCGATCAAAGTCCAACACAGAGAGGCCAAGAAGAGGATCAGACGGAGGAGAGTGGATCTTGA
Protein Sequence MPPKRFLINSKNYFLTYPKCSLTKEEALSQLQNLQTPTNKKFIKICKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSIHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAQALNTGSKPEALRVLRELAPKDYVLQFHNLNANLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPLSLVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNQALKNWAIKNALFFTLEEPLYSSADQSPTQRGQEEDQTEESGS

NCBI Accession YP_010086874.1
Location 2129-2431
Gene Name AC4
Protein Name regulatory protein
Coding Region ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTGTCCCCAAGCAGGTCAATACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAGACAGCAAATGATGCTTACGCCCAGGCACTTAACACCGGCAGTAAGCCAGAGGCTCTTAGAGTACTTAGGGAGTTAG
Protein Sequence MGNLIFTCSSSSRGNTSARISDSSTWCPQAGQYISIQTFRELNPAPTSSPISTRTETPSNGESFRSMEDLQEEDNRQQMMLTPRHLTPAVSQRLLEYLGS

References More References in PubMed

1

Complete genome sequence of hollyhock vein yellowing virus, a novel monopartite begomovirus infecting hollyhock in Pakistan.

Khan A, et al.  Arch Virol. 2021 Sep;166(9):2607-2610. doi: 10.1007/s00705-021-05134-7. Epub 2021 Jun 11.

PMID: 34115211
2

Association of a distinct strain of hollyhock yellow vein mosaic virus and Ludwigia leaf distortion betasatellite with yellow vein mosaic disease of hollyhock (Alcea rosea) in India.

Srivastava A, et al.  Arch Virol. 2014 Oct;159(10):2711-5. doi: 10.1007/s00705-014-2108-1. Epub 2014 May 9.

PMID: 24810100
3

Association of a begomovirus-satellite complex with yellow vein and leaf curl disease of hollyhock (Alcea rosea) in India.

Kumar M, et al.  Arch Virol. 2020 Sep;165(9):2099-2103. doi: 10.1007/s00705-020-04696-2. Epub 2020 Jun 18.

PMID: 32556597
4

Prevalence, transmission and molecular characterization of Cotton leaf curl Multan virus infecting hollyhock plants in Pakistan.

Azeem H, et al.  Mol Biol Rep. 2022 Jun;49(6):5635-5644. doi: 10.1007/s11033-022-07557-0. Epub 2022 May 22.

PMID: 35598198
5

First Report of Malva vein clearing virus Naturally Occurring in Hollyhock in Germany.

Menzel W, et al.  Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276B.

PMID: 30754276
6

Bhendi Yellow Vein Mosaic Virus and Bhendi Yellow Vein Mosaic Betasatellite Cause Enation Leaf Curl Disease and Alter Host Phytochemical Contents in Okra.

Singh AK, et al.  Plant Dis. 2021 Sep;105(9):2595-2600. doi: 10.1094/PDIS-12-20-2655-RE. Epub 2021 Oct 28.

PMID: 33393356
7

Corchorus yellow vein virus, a New World geminivirus from the Old World.

Ha C, et al.  J Gen Virol. 2006 Apr;87(Pt 4):997-1003. doi: 10.1099/vir.0.81631-0.

PMID: 16528050
8

Agrobacterium-mediated co-inoculation of okra plants with cloned okra enation leaf curl virus DNA and bhendi yellow vein mosaic beta-satellite DNA furthers Koch's postulates for enation leaf curl disease.

Gupta K, et al.  J Virol Methods. 2022 Feb;300:114413. doi: 10.1016/j.jviromet.2021.114413. Epub 2021 Dec 10.

PMID: 34902462
9

Detection of Mesta yellow vein mosaic virus (MeYVMV) in field samples by a loop-mediated isothermal amplification reaction.

Meena PN, et al.  J Virol Methods. 2019 Jan;263:81-87. doi: 10.1016/j.jviromet.2018.10.016. Epub 2018 Oct 22.

PMID: 30359678
10

Association of tomato leaf curl New Delhi virus DNA-B with bhendi yellow vein mosaic virus in okra showing yellow vein mosaic disease symptoms.

Venkataravanappa V, et al.  Acta Virol. 2015 Jun;59(2):125-39. doi: 10.4149/av_2015_02_125.

PMID: 26104329