Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000896675.1 |
Isolate | Pakistan:Lahore |
Release date | 2015/2/22 |
Submitter | Zia Ur Rehman,M., Haider,M.S., Zia ur Rehman,M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_005086953.1 |
---|---|
Location | 131-478 |
Gene Name | av2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCACTGTTAAACGAGTTCCCTGAGACTGTTCACGGGTTTCGTTGCATGCTTGCGATTAAATATCTTCAACAACTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATCTAATTCGCGATTTAATTTCTATTTTACGTTCCAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSHLGEQAHVSEAQNVQDVQKP |
NCBI Accession | YP_005086954.1 |
---|---|
Location | 291-1061 |
Gene Name | av1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCTTTCGATGCGAAAAATGATATTGGGCATATGGGTAAGGTAATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTTTGCGTTAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACTAAGAACCATACAAACACTGTTTTGTTCTGGATCGTGAGAGACAGGCGTCCTTCAGGAACTCCTAATGATTTCCAGCAAGTTTTCAATGTTTATGATAACGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTAATCGTTTTCAGGTGTTGAGGAGGTTCCAGGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATCAGGAAATTCTATCGTGTTAACAATTATGTTGTCTATAATCACCAGGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTACATGGCATGTACCCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGAAGTTATTTCTATGATTCTGTAACCAATTAA |
Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRIWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKTKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRNRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
NCBI Accession | YP_005086955.1 |
---|---|
Location | 1064-1468 |
Gene Name | ac3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTTACGCACAGAGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACGAGGTCTGTCCTTACTCGAGCAAGATGGACATAATAACAATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGGGTTTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCATAAAGTATCTCAACAATATAGGAGTAATCTCAATTAATTCGATTATTAGAGCAGTAGATCATGTATTGTACAGTAAAATAGAACAAACTATGTATGTAGACCAAGTTTCAGAAATAAAATTCGATATTTATTAA |
Protein Sequence | MDLRTEEPITAAQAWSGAYIWEVPNPLYFKILSHEVCPYSSKMDIITIRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVIKYLNNIGVISINSIIRAVDHVLYSKIEQTMYVDQVSEIKFDIY |
NCBI Accession | YP_005086956.1 |
---|---|
Location | 1161-1613 |
Gene Name | ac2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCGATCTTCGTCACCCTTGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATCTGTCTATAAACTGTTTCAACCATGGATTTACGCACAGAGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACGAGGTCTGTCCTTACTCGAGCAAGATGGACATAATAACAATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGGGTTTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCATAAAGTATCTCAACAATATAGGAGTAATCTCAATTAA |
Protein Sequence | MRSSSPLKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYYLSINCFNHGFTHRGTHHCSSSMEWRLYLGSTKSPLFQDPKPRGLSLLEQDGHNNNQDPIQLQPSESSGSAQVFSDLPGLDDLTPSDWSFLKGIQDPSHKVSQQYRSNLN |
NCBI Accession | YP_005086957.1 |
---|---|
Location | 1510-2601 |
Gene Name | ac1 |
Protein Name | replication associated protein |
Coding Region | ATGGCTCCTCCCAAACAATTCCAGATAAATGCCAAAAATTATTTCATCACTTATCCCACATGCTCTCTTACTAAAGAGGAGGCACTTTCCCAATTACAAAACCTACAAACCCCAGTAAACAAAAAATACATTAGAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGCAAATACAAGTGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCCAAGGACGGGGACATTCTCGACTGGGGAGAATTTCAGATCGATGGAAGATCAGCAAGAGGAGGGCAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCGTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGTGTGTAAATGTTGTCGACGCCGCTGCGCGGCCCCTGAGACCTCAAAGTATAGTAATTGAGGGCGACAGTCGTACTGGGAAAACAATGTGGGCTAGGTCTTTAGGCCCACATAACTATTTATGTGGGCATTTAGATCTAAGCCCAAAGGTGTACAGTAATGACGCTTGGTATAACGTCATTGATGACGTTGATCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATACCAACAATCTTCCTCTGCAATCCTGGTCCTAACAGCAGTTATAAAGAATTCCTGGACGAGGAAAAGAACACTGCACTAAAGAACTGGACAGACAAGAATGCGATCTTCGTCACCCTTGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTAGATCTTGA |
Protein Sequence | MAPPKQFQINAKNYFITYPTCSLTKEEALSQLQNLQTPVNKKYIRICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIAKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWACVNVVDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTDKNAIFVTLEGPLYSGSNQSTAQGSEETQQEEESRS |
NCBI Accession | YP_005086958.1 |
---|---|
Location | 2142-2450 |
Gene Name | ac4 |
Protein Name | AC4 protein |
Coding Region | ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGCAAATACAAGTGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCCAAGGACGGGGACATTCTCGACTGGGGAGAATTTCAGATCGATGGAAGATCAGCAAGAGGAGGGCAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAG |
Protein Sequence | MKMGNLIFTCSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELNPAPTSSPTSPRTGTFSTGENFRSMEDQQEEGNRQPTTLTPQHLTREVSRRLLESLRN |
1 |
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