Hollyhock yellow vein mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000896675.1
Isolate Pakistan:Lahore
Release date 2015/2/22
Submitter Zia Ur Rehman,M., Haider,M.S., Zia ur Rehman,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_016649
ACCGGATGGCCGCGCGATTTTTTTTGTGGGCCCCTCCACTAACTCTTGTCTGCCAATCAAATGACGCGCTCAAAGCTTAAATAATTTCCCGCCTATTATAAGTACTTCTTCGACAAGTTTCATTTTGAAAATGTGGGATCCACTGTTAAACGAGTTCCCTGAGACTGTTCACGGGTTTCGTTGCATGCTTGCGATTAAATATCTTCAACAACTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATCTAATTCGCGATTTAATTTCTATTTTACGTTCCAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCTTTCGATGCGAAAAATGATATTGGGCATATGGGTAAGGTAATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTTTGCGTTAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACTAAGAACCATACAAACACTGTTTTGTTCTGGATCGTGAGAGACAGGCGTCCTTCAGGAACTCCTAATGATTTCCAGCAAGTTTTCAATGTTTATGATAACGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTAATCGTTTTCAGGTGTTGAGGAGGTTCCAGGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATCAGGAAATTCTATCGTGTTAACAATTATGTTGTCTATAATCACCAGGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTACATGGCATGTACCCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGAAGTTATTTCTATGATTCTGTAACCAATTAATATTAATAAATATCGAATTTTATTTCTGAAACTTGGTCTACATACATAGTTTGTTCTATTTTACTGTACAATACATGATCTACTGCTCTAATAATCGAATTAATTGAGATTACTCCTATATTGTTGAGATACTTTATGACTTGGGTCTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAAACCCGGAAGGTCAGAAAACACTTGTGCACTCCCAGAGCTCTCCGAAGGTTGTAGTTGAATTGGATCCTGATTGTTATTATGTCCATCTTGCTCGAGTAAGGACAGACCTCGTGGCTTAGGATCTTGAAATAAAGGGGATTTGGTACTTCCCAGATATAGGCGCCACTCCATGCTTGAGCTGCAGTGATGGGTTCCTCTGTGCGTAAATCCATGGTTGAAACAGTTTATAGACAGATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCTGTTGCGTTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGAACCTGAGTACAGTGGTCCTTCAAGGGTGACGAAGATCGCATTCTTGTCTGTCCAGTTCTTTAGTGCAGTGTTCTTTTCCTCGTCCAGGAATTCTTTATAACTGCTGTTAGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAGTGCGGATCAACGTCATCAATGACGTTATACCAAGCGTCATTACTGTACACCTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTTTTCCCAGTACGACTGTCGCCCTCAATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTTACACACGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGACGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCCGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGCCCTCCTCTTGCTGATCTTCCATCGATCTGAAATTCTCCCCAGTCGAGAATGTCCCCGTCCTTGGCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTGTTATTTTTGCACTTGTATTTGCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTCTAATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTGTAATTGGGAAAGTGCCTCCTCTTTAGTAAGAGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTATCTGGAATTGTTTGGGAGGAGCCATTGACTTGGTCAATCGGTACCCAGCACTAGTCTTATGGCAATTGGGGAACGGTACCCTATATATAGTTGGGTACCAAATGGCAATAATTGTAATTACGTAATCAAATTCAAAATCCTCGCGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_005086953.1
Location 131-478
Gene Name av2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTGTTAAACGAGTTCCCTGAGACTGTTCACGGGTTTCGTTGCATGCTTGCGATTAAATATCTTCAACAACTGTCTGAAGAATACTCTCCTGATACGGTAGGTTACGATCTAATTCGCGATTTAATTTCTATTTTACGTTCCAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSHLGEQAHVSEAQNVQDVQKP

NCBI Accession YP_005086954.1
Location 291-1061
Gene Name av1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGACTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGCCCCCACTGTCCGCGTCACAAAGTCTCGCATTTGGGCGAACAGGCCCATGTATCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCATGTAAGGTGCAGTCTTTCGATGCGAAAAATGATATTGGGCATATGGGTAAGGTAATTTGTCTTTCTGATGTTACTAGGGGTATTGGGCTGACCCATCGAGTAGGGAAACGTTTTTGCGTTAAGTCATTGTATTTTGTTGGCAAAATATGGATGGACGAGAACATCAAGACTAAGAACCATACAAACACTGTTTTGTTCTGGATCGTGAGAGACAGGCGTCCTTCAGGAACTCCTAATGATTTCCAGCAAGTTTTCAATGTTTATGATAACGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTAATCGTTTTCAGGTGTTGAGGAGGTTCCAGGCAACAGTCACAGGTGGTCAATATGCTGCTAAGGAACAAGCTATAATCAGGAAATTCTATCGTGTTAACAATTATGTTGTCTATAATCACCAGGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTACATGGCATGTACCCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGAAGTTATTTCTATGATTCTGTAACCAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRIWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKTKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRNRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession YP_005086955.1
Location 1064-1468
Gene Name ac3
Protein Name replication enhancer protein
Coding Region ATGGATTTACGCACAGAGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACGAGGTCTGTCCTTACTCGAGCAAGATGGACATAATAACAATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGGGTTTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCATAAAGTATCTCAACAATATAGGAGTAATCTCAATTAATTCGATTATTAGAGCAGTAGATCATGTATTGTACAGTAAAATAGAACAAACTATGTATGTAGACCAAGTTTCAGAAATAAAATTCGATATTTATTAA
Protein Sequence MDLRTEEPITAAQAWSGAYIWEVPNPLYFKILSHEVCPYSSKMDIITIRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVIKYLNNIGVISINSIIRAVDHVLYSKIEQTMYVDQVSEIKFDIY

NCBI Accession YP_005086956.1
Location 1161-1613
Gene Name ac2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCGTCACCCTTGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATCTGTCTATAAACTGTTTCAACCATGGATTTACGCACAGAGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATATCTGGGAAGTACCAAATCCCCTTTATTTCAAGATCCTAAGCCACGAGGTCTGTCCTTACTCGAGCAAGATGGACATAATAACAATCAGGATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTGCACAAGTGTTTTCTGACCTTCCGGGTTTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCATAAAGTATCTCAACAATATAGGAGTAATCTCAATTAA
Protein Sequence MRSSSPLKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYYLSINCFNHGFTHRGTHHCSSSMEWRLYLGSTKSPLFQDPKPRGLSLLEQDGHNNNQDPIQLQPSESSGSAQVFSDLPGLDDLTPSDWSFLKGIQDPSHKVSQQYRSNLN

NCBI Accession YP_005086957.1
Location 1510-2601
Gene Name ac1
Protein Name replication associated protein
Coding Region ATGGCTCCTCCCAAACAATTCCAGATAAATGCCAAAAATTATTTCATCACTTATCCCACATGCTCTCTTACTAAAGAGGAGGCACTTTCCCAATTACAAAACCTACAAACCCCAGTAAACAAAAAATACATTAGAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGCAAATACAAGTGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCCAAGGACGGGGACATTCTCGACTGGGGAGAATTTCAGATCGATGGAAGATCAGCAAGAGGAGGGCAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCGTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGTGTGTAAATGTTGTCGACGCCGCTGCGCGGCCCCTGAGACCTCAAAGTATAGTAATTGAGGGCGACAGTCGTACTGGGAAAACAATGTGGGCTAGGTCTTTAGGCCCACATAACTATTTATGTGGGCATTTAGATCTAAGCCCAAAGGTGTACAGTAATGACGCTTGGTATAACGTCATTGATGACGTTGATCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATACCAACAATCTTCCTCTGCAATCCTGGTCCTAACAGCAGTTATAAAGAATTCCTGGACGAGGAAAAGAACACTGCACTAAAGAACTGGACAGACAAGAATGCGATCTTCGTCACCCTTGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAGGAGAGTAGATCTTGA
Protein Sequence MAPPKQFQINAKNYFITYPTCSLTKEEALSQLQNLQTPVNKKYIRICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIAKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWACVNVVDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTDKNAIFVTLEGPLYSGSNQSTAQGSEETQQEEESRS

NCBI Accession YP_005086958.1
Location 2142-2450
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGCAAATACAAGTGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCCAAGGACGGGGACATTCTCGACTGGGGAGAATTTCAGATCGATGGAAGATCAGCAAGAGGAGGGCAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCGGAGGCTCTTAGAGTCATTAAGGAACTAG
Protein Sequence MKMGNLIFTCSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELNPAPTSSPTSPRTGTFSTGENFRSMEDQQEEGNRQPTTLTPQHLTREVSRRLLESLRN

References More References in PubMed

1

Bhendi Yellow Vein Mosaic Virus and Bhendi Yellow Vein Mosaic Betasatellite Cause Enation Leaf Curl Disease and Alter Host Phytochemical Contents in Okra.

Singh AK, et al.  Plant Dis. 2021 Sep;105(9):2595-2600. doi: 10.1094/PDIS-12-20-2655-RE. Epub 2021 Oct 28.

PMID: 33393356
2

Complete genome sequence of hollyhock vein yellowing virus, a novel monopartite begomovirus infecting hollyhock in Pakistan.

Khan A, et al.  Arch Virol. 2021 Sep;166(9):2607-2610. doi: 10.1007/s00705-021-05134-7. Epub 2021 Jun 11.

PMID: 34115211
3

Association of a distinct strain of hollyhock yellow vein mosaic virus and Ludwigia leaf distortion betasatellite with yellow vein mosaic disease of hollyhock (Alcea rosea) in India.

Srivastava A, et al.  Arch Virol. 2014 Oct;159(10):2711-5. doi: 10.1007/s00705-014-2108-1. Epub 2014 May 9.

PMID: 24810100
4

Agrobacterium-mediated co-inoculation of okra plants with cloned okra enation leaf curl virus DNA and bhendi yellow vein mosaic beta-satellite DNA furthers Koch's postulates for enation leaf curl disease.

Gupta K, et al.  J Virol Methods. 2022 Feb;300:114413. doi: 10.1016/j.jviromet.2021.114413. Epub 2021 Dec 10.

PMID: 34902462
5

Identification of Cacao Mild Mosaic Virus (CaMMV) and Cacao Yellow Vein-Banding Virus (CYVBV) in Cocoa (Theobroma cacao) Germplasm.

Ullah I, et al.  Viruses. 2021 Oct 26;13(11):2152. doi: 10.3390/v13112152.

PMID: 34834959
6

Detection of Mesta yellow vein mosaic virus (MeYVMV) in field samples by a loop-mediated isothermal amplification reaction.

Meena PN, et al.  J Virol Methods. 2019 Jan;263:81-87. doi: 10.1016/j.jviromet.2018.10.016. Epub 2018 Oct 22.

PMID: 30359678
7

Association of a begomovirus-satellite complex with yellow vein and leaf curl disease of hollyhock (Alcea rosea) in India.

Kumar M, et al.  Arch Virol. 2020 Sep;165(9):2099-2103. doi: 10.1007/s00705-020-04696-2. Epub 2020 Jun 18.

PMID: 32556597
8

Development of transgenic okra (Abelmoschus esculentus L. Moench) lines having RNA mediated resistance to Yellow vein mosaic virus (Geminiviridae).

Ganesh KV, et al.  J Virol Methods. 2022 Mar;301:114457. doi: 10.1016/j.jviromet.2022.114457. Epub 2022 Jan 6.

PMID: 34998828
9

Genetic control of yellow vein mosaic virus disease tolerance in Abelmoschus esculentus (L.) Moench.

Senjam P, et al.  J Genet. 2018 Mar;97(1):25-33.

PMID: 29666322
10

Molecular analysis, infectivity and host range of Tomato leaf curl Karnataka virus associated with Corchorus yellow vein mosaic betasatellite.

Dokka N, et al.  Virus Res. 2021 Oct 2;303:198521. doi: 10.1016/j.virusres.2021.198521. Epub 2021 Jul 24.

PMID: 34314770