Hollyhock leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002986605.1
Isolate Pakistan:Faisalabad
Release date 2018/8/26
Submitter Zia Ur Rehman,M., Haider,M.S., Zia ur Rehman,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038884
ACCGGATGGCCGCGCAATTTTTTTGGGTCCCACCACTAACTCTTGTCTGCCAATCATATACGGCGCTCAAAGCTTAAATAAATATCCCGCTTATTATAAATACTTCCTTGCTAAGTTTCAGTTTGAAAAATGTGGGATCCACTTTTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGTTGCATGCTTGCGATAAAATACCTGCAACTGCTGTCTGAGGAATACTCTCCGGATACGGTAGGTTACGATTTAATTCGCGATTTAATTTCTATTTTACGATCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCACGCATGTGGGCGAACAGGCCCATGAACCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGCTGACCCATAGAGTTGGGAAACGTTTCTGTGTTAAATCAGTCTATGTATTGGGTAAGATCTGGATGGATGAAAACATAAAGTCCAAAAACCACACTAACAATGTGATGTTCTTCTTGGTCCGTGATCGACGGCCTGTGGATAAGCCTCAGGATTTTGGAGAGGTCTTCAACATGTTCGACAACGAGCCCAGCACCGCTACTGTCAAGAATGTTCATCGAGATCGCTACCAGGTGTTGAGGAAATGGTATGCAACAGTTACGGGTGGTCAATATGGAGCAAAGGAACAGGCCTTGGTCAAGAAGTTTGTCCGAGTTAACAATTATGTTGTTTACAATCAGCAAGAGGCAGGGAAATATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCAGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACCAACTGATATTAATAAATATCGAATTTTATTTCTGAATTCATGTCTACGTACACAGTTTGTTCTATTTTTTCCCATAATACATGGTTTACAGCTCTGATAATTGAATTAATTGAGATTACACCCAGATTGTTGAGATACTTGAGGATTTGTGTCTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGCGTAAGGTCGTCCAGATTCGGTAGGTCAGAAAACCACTTGTGACTCCCAGAGCTCTCCGAAGGTTGTAGTTGAATTGGATTCTGATCTTTATTATGTCCGTTGTCATTGTGAATGGCCGGTTGTCGTGGCTGAGGATCTTGAAATAGAGGGGATTTGGAACCTCCCAGGTATAGGCGCCACTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGAAGCAGTTTATAGATAGAAAATAAGAACACCCGCATTCAAGATCGACTCTCCTCCTCCTGTGTACCCTCTTGGCTTCCCTGTGCTGTACTTTGATTGGAACCGGAGTACAGTGGTCCTTCGAGGGTGACGAAAATCGCATTTTTGAGAGCCCAATTCTTTAATGCTGTGTTCTTGTCCTCGTCGAGGAATTCTTTATAGCTGCTGTTAGGACCAGGATTGCATAAGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTACTTAGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATAAACTCCTTAAAGTGCTTGAGGAAGTGCGGGTCGACGTCATCAATGACGTTGTACCACGCGTCGTTACTATAGACTTTTGGGCTTAGATCCAAATGCCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTTCCCAGTACGACTATCTCCCTCAATTACTATACTTTGAGGTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTCTCAGACACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAATAGGAAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTTTGTTGCCCTCCTCTTGCTGATCTTCCGTCGATCTGAAATTCGCCCCAGTCGAGAATGTCCCCGTCCTTAGCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTGTTATTTTTGCATTTGTATTTGCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTCTAATGTATTTTTTGTTTACTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCAAGTGGGATAAGTGAGGAAATAATTTTTGGCATATATCTGAAATTGTTTGGGAGGAGCCATTGACTTGGTCAATCGGTACCCAGATATAGTCTTATGTCAATTGGTGAACGGTACCCTATATATATTGGGTACTGAATGGCAATATTTGTAATTATGAAAATAAATTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508128.1
Location 130-477
Gene Name av2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTTTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGTTGCATGCTTGCGATAAAATACCTGCAACTGCTGTCTGAGGAATACTCTCCGGATACGGTAGGTTACGATTTAATTCGCGATTTAATTTCTATTTTACGATCTAGGAATTATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCACGCATGTGGGCGAACAGGCCCATGAACCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLLSEEYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASASELRQPLCNPCSCPHCPRHKITHVGEQAHEPEAQNVQNVQKP

NCBI Accession YP_009508129.1
Location 290-1060
Gene Name av1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCCGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCCTATGCAACCCGTGCAGTTGTCCCCACTGTCCGCGTCACAAAATCACGCATGTGGGCGAACAGGCCCATGAACCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCAAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATTAGTGATGTTACTCGCGGTACTGGGCTGACCCATAGAGTTGGGAAACGTTTCTGTGTTAAATCAGTCTATGTATTGGGTAAGATCTGGATGGATGAAAACATAAAGTCCAAAAACCACACTAACAATGTGATGTTCTTCTTGGTCCGTGATCGACGGCCTGTGGATAAGCCTCAGGATTTTGGAGAGGTCTTCAACATGTTCGACAACGAGCCCAGCACCGCTACTGTCAAGAATGTTCATCGAGATCGCTACCAGGTGTTGAGGAAATGGTATGCAACAGTTACGGGTGGTCAATATGGAGCAAAGGAACAGGCCTTGGTCAAGAAGTTTGTCCGAGTTAACAATTATGTTGTTTACAATCAGCAAGAGGCAGGGAAATATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCAGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACCAACTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRMWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009508130.1
Location 1063-1467
Gene Name ac3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGGCCATTCACAATGACAACGGACATAATAAAGATCAGAATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTCACAAGTGGTTTTCTGACCTACCGAATCTGGACGACCTTACGCCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACACAAATCCTCAAGTATCTCAACAATCTGGGTGTAATCTCAATTAATTCAATTATCAGAGCTGTAAACCATGTATTATGGGAAAAAATAGAACAAACTGTGTACGTAGACATGAATTCAGAAATAAAATTCGATATTTATTAA
Protein Sequence MDSRTGEPITAAQAWSGAYTWEVPNPLYFKILSHDNRPFTMTTDIIKIRIQFNYNLRRALGVTSGFLTYRIWTTLRPPTGLFLRVFKTQILKYLNNLGVISINSIIRAVNHVLWEKIEQTVYVDMNSEIKFDIY

NCBI Accession YP_009508131.1
Location 1160-1612
Gene Name ac2
Protein Name transcriptional activator protein
Coding Region ATGCGATTTTCGTCACCCTCGAAGGACCACTGTACTCCGGTTCCAATCAAAGTACAGCACAGGGAAGCCAAGAGGGTACACAGGAGGAGGAGAGTCGATCTTGAATGCGGGTGTTCTTATTTTCTATCTATAAACTGCTTCAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAGTGGCGCCTATACCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGGCCATTCACAATGACAACGGACATAATAAAGATCAGAATCCAATTCAACTACAACCTTCGGAGAGCTCTGGGAGTCACAAGTGGTTTTCTGACCTACCGAATCTGGACGACCTTACGCCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACACAAATCCTCAAGTATCTCAACAATCTGGGTGTAATCTCAATTAA
Protein Sequence MRFSSPSKDHCTPVPIKVQHREAKRVHRRRRVDLECGCSYFLSINCFNHGFTHRGTHHCSSSMEWRLYLGGSKSPLFQDPQPRQPAIHNDNGHNKDQNPIQLQPSESSGSHKWFSDLPNLDDLTPSDWSFLKGIQDTNPQVSQQSGCNLN

NCBI Accession YP_009508132.1
Location 1509-2600
Gene Name ac1
Protein Name replication associated protein
Coding Region ATGGCTCCTCCCAAACAATTTCAGATATATGCCAAAAATTATTTCCTCACTTATCCCACTTGCTCTCTTACTAAAGAGGAAGCACTTTCCCAATTACAAAACCTACAGACACCAGTAAACAAAAAATACATTAGAATCTGCAGAGAGTTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGCAAATACAAATGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCTAAGGACGGGGACATTCTCGACTGGGGCGAATTTCAGATCGACGGAAGATCAGCAAGAGGAGGGCAACAAACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCTTTTTCCTATTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTGTCTGAGAATGTTGTCGACGCCGCTGCGCGGCCCCTGAGACCTCAAAGTATAGTAATTGAGGGAGATAGTCGTACTGGGAAAACAATGTGGGCTAGGTCTCTAGGCCCACATAACTATTTATGTGGGCATTTGGATCTAAGCCCAAAAGTCTATAGTAACGACGCGTGGTACAACGTCATTGATGACGTCGACCCGCACTTCCTCAAGCACTTTAAGGAGTTTATGGGGGCCCAAAGGGACTGGCAGTCCAACACTAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGCATACCGACAATCTTCTTATGCAATCCTGGTCCTAACAGCAGCTATAAAGAATTCCTCGACGAGGACAAGAACACAGCATTAAAGAATTGGGCTCTCAAAAATGCGATTTTCGTCACCCTCGAAGGACCACTGTACTCCGGTTCCAATCAAAGTACAGCACAGGGAAGCCAAGAGGGTACACAGGAGGAGGAGAGTCGATCTTGA
Protein Sequence MAPPKQFQIYAKNYFLTYPTCSLTKEEALSQLQNLQTPVNKKYIRICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIAKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSYSSFDQVPEELEEWVSENVVDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNTALKNWALKNAIFVTLEGPLYSGSNQSTAQGSQEGTQEEESRS

NCBI Accession YP_009508133.1
Location 2141-2449
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAGGGCAAATACAAATGCAAAAATAACAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGCTAAGGACGGGGACATTCTCGACTGGGGCGAATTTCAGATCGACGGAAGATCAGCAAGAGGAGGGCAACAAACAGCCAACGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG
Protein Sequence MKMGNLIFTCSSSSRANTNAKITDSSTSYPQPGQHISIQTFRELNPAPTSSPTSLRTGTFSTGANFRSTEDQQEEGNKQPTTLTPQHLTREVSQRLLESLRN

References More References in PubMed

1

Prevalence, transmission and molecular characterization of Cotton leaf curl Multan virus infecting hollyhock plants in Pakistan.

Azeem H, et al.  Mol Biol Rep. 2022 Jun;49(6):5635-5644. doi: 10.1007/s11033-022-07557-0. Epub 2022 May 22.

PMID: 35598198

2

Complete genome sequence of hollyhock vein yellowing virus, a novel monopartite begomovirus infecting hollyhock in Pakistan.

Khan A, et al.  Arch Virol. 2021 Sep;166(9):2607-2610. doi: 10.1007/s00705-021-05134-7. Epub 2021 Jun 11.

PMID: 34115211

3

Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses.

Zaidi SS, et al.  Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17.

PMID: 27553982

4

Cotton leaf curl virus disease.

Briddon RW, et al.  Virus Res. 2000 Nov;71(1-2):151-9. doi: 10.1016/s0168-1702(00)00195-7.

PMID: 11137169

5

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022

6

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467

7

Association of a begomovirus-satellite complex with yellow vein and leaf curl disease of hollyhock (Alcea rosea) in India.

Kumar M, et al.  Arch Virol. 2020 Sep;165(9):2099-2103. doi: 10.1007/s00705-020-04696-2. Epub 2020 Jun 18.

PMID: 32556597

8

Cotton Leaf Curl Disease: Which Whitefly Is the Vector?

Pan LL, et al.  Phytopathology. 2018 Oct;108(10):1172-1183. doi: 10.1094/PHYTO-01-18-0015-R. Epub 2018 Aug 21.

PMID: 29714092

9

Infectivity of okra enation leaf curl virus and the role of its V2 protein in pathogenicity.

Saeed F, et al.  Virus Res. 2018 Aug 15;255:90-94. doi: 10.1016/j.virusres.2018.07.007. Epub 2018 Jul 18.

PMID: 30009848

10

A multiplex polymerase chain reaction for the simultaneous detection of the virus and satellite components associated with cotton leaf curl begomovirus disease complex.

Palchoudhury S, et al.  J Virol Methods. 2022 Feb;300:114369. doi: 10.1016/j.jviromet.2021.114369. Epub 2021 Nov 20.

PMID: 34813823