Hibiscus yellow vein leaf curl virus

Basic Information

Genus Begomovirus
Isolate Taiwan
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

MF140451
CCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCTATCAAATATCTTCAGTTACTCTCTGAAGGCTATTCTCCGGATACGGTTGGTTACGATCTAATACGTGAATTAATTTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGCGAGGGTCCATGTAAGGTTCAGTCATTTGAGTCTAGACACGACGTAGTCCATATAGGTAAGGTTATGTGTATTAGTGATGTCACCCGTGGTACAGGTCTGACCCATAGAGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTATGTTTTGGGTAAGATATGGATGGATGAAAATATTAAGACCAAGAATCATACGAATAATGTTATGTTCTTCCTTGTTCGTGATCGACGTCCGACCGGCACGCCCCAGGATTTTGGAGAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTAAAGAATGTGCATCGAGATCGTTACCAGGTTCTTAGGAAATGGTATGCAACCGTCACTGGTGGACAGTATGCTGCAAAGGAGCAGGCGTTGGTTAAGAAATTTATTAAGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATACGAGAACCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACGCATGCCTCTAATCCTGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGATATTAATAAAGATCGAATTTTATTTCTGAATTCATGTCTACATACATTGTTTGCTCTATCTTTCTCCATAATACATGATCTACAGCTCTTATAATTGCGTTAATTGAGATTACACCTAGATTGTTGAGATATTTGAGGACTTGTGTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGGCGTAAGGTCGTCCAGATTCGGTAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTTATTGTTATGATGTCCATGTTCATCGTGAATGGACGGTCGGCGTGGTTGAGGATCTTGAAATAAAGGGGATTTGGAACCTCCCAGATATAGGCGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTAAATCCATGGTCGTAGCAGTTGATTGACAGAAAATAAGAACAGCCGCATTCAAGATCTACTCTCTTCCTCCTGTTGCGTTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGATCCTGAGTATAGTGGTCTTTCGAGGGTGACGAAGATCGCATTCTTGAGGGTCCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCGAGGAATTCTTTATAGCTGCTGTTGGGACCAGGATTGCAAAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGTTTTCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATTACGTTGTACCAGGCGTCGTTACTGTATACTTTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCTTTCCCGTACGACTATCTCCCTCAATTACTATACTCCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCCAACGCCCAAACTTCAAGTGCTTCTGGAACTTGATCGAACGAAGAAGAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGATGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGACTTTGATGTATTTTTTATTCGAGGGTGTGTTGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCTTGTATTTTAAAACGCTTGGGGGGAGCCATTGACTTTGGTCAATTGGAGACAACTGATTTCATTTTACTCTGGCAATTGGAGACAGGAGACAATATATAGTGTCTCCAAATGGCATTATCGTAATTTGAGAAATCATTTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession AWB51906.1
Location 119-466
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCACTCTTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCTATCAAATATCTTCAGTTACTCTCTGAAGGCTATTCTCCGGATACGGTTGGTTACGATCTAATACGTGAATTAATTTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLSIKYLQLLSEGYSPDTVGYDLIRELISILRSRNYVEASCRYRNFYPRVEGASSSELRQPLLNPCSCPYCPRHKISNVGEQAHESQAQNVQDVQKP

NCBI Accession AWB51907.1
Location 279-1049
Gene Name V1
Protein Name V1 protein
Coding Region ATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGCGAGGGTCCATGTAAGGTTCAGTCATTTGAGTCTAGACACGACGTAGTCCATATAGGTAAGGTTATGTGTATTAGTGATGTCACCCGTGGTACAGGTCTGACCCATAGAGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTATGTTTTGGGTAAGATATGGATGGATGAAAATATTAAGACCAAGAATCATACGAATAATGTTATGTTCTTCCTTGTTCGTGATCGACGTCCGACCGGCACGCCCCAGGATTTTGGAGAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTAAAGAATGTGCATCGAGATCGTTACCAGGTTCTTAGGAAATGGTATGCAACCGTCACTGGTGGACAGTATGCTGCAAAGGAGCAGGCGTTGGTTAAGAAATTTATTAAGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATACGAGAACCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACGCATGCCTCTAATCCTGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWANRPTNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPTGTPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYAAKEQALVKKFIKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession AWB51908.1
Location 1052-1456
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCCTCAACCACGCCGACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTACCGAATCTGGACGACCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAACACAAGTCCTCAAATATCTCAACAATCTAGGTGTAATCTCAATTAACGCAATTATAAGAGCTGTAGATCATGTATTATGGAGAAAGATAGAGCAAACAATGTATGTAGACATGAATTCAGAAATAAAATTCGATCTTTATTAA
Protein Sequence MDLRTGEPITAAQAWNGAYIWEVPNPLYFKILNHADRPFTMNMDIITIRIQFNYNLRKALGVHKCFLTYRIWTTLRPQTGLFLRVFKTQVLKYLNNLGVISINAIIRAVDHVLWRKIEQTMYVDMNSEIKFDLY

NCBI Accession AWB51909.1
Location 1149-1601
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAAGACCACTATACTCAGGATCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAAGAGAGTAGATCTTGAATGCGGCTGTTCTTATTTTCTGTCAATCAACTGCTACGACCATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCCTCAACCACGCCGACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTACCGAATCTGGACGACCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAACACAAGTCCTCAAATATCTCAACAATCTAGGTGTAATCTCAATTAA
Protein Sequence MRSSSPSKDHYTQDPIKVQHREAKKRNRRKRVDLECGCSYFLSINCYDHGFTHRGTHHCSSSMEWRLYLGGSKSPLFQDPQPRRPSIHDEHGHHNNKDPIQLQPSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNTSPQISQQSRCNLN

NCBI Accession AWB51910.1
Location 1498-2589
Gene Name C1
Protein Name C1 protein
Coding Region ATGGCTCCCCCCAAGCGTTTTAAAATACAAGCCAAAAATTATTTCCTCACTTATCCACAGTGCTCACTCACTAAAGAGGAAGCACTTTCCCAAATTCAAGCCATCAACACACCCTCGAATAAAAAATACATCAAAGTCTGCAGAGAGTTACACGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCATCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTCTTCTTCGTTCGATCAAGTTCCAGAAGCACTTGAAGTTTGGGCGTTGGATAACGTTGTCGATGCCGCTGCGCGGCCCCTTAGACCTCGGAGTATAGTAATTGAGGGAGATAGTCGTACGGGAAAGACGATGTGGGCTAGGTCATTGGGACCACATAACTATTTGTGCGGACATCTGGACCTGAGTCCCAAAGTATACAGTAACGACGCCTGGTACAACGTAATTGATGACGTCGACCCGCATTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAGTCCAACACAAAATACGGAAAACCAGTTCAAATTAAAGGCGGGATACCCACAATCTTCCTTTGCAATCCTGGTCCCAACAGCAGCTATAAAGAATTCCTCGACGAGGAAAAGAACACCGCACTAAAAAACTGGACCCTCAAGAATGCGATCTTCGTCACCCTCGAAAGACCACTATACTCAGGATCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAAGAGAGTAGATCTTGA
Protein Sequence MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIKVCRELHEDGSPHLHVLIQFEGKFICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEALEVWALDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTLKNAIFVTLERPLYSGSNQSTAQGSEETQQEEESRS

NCBI Accession AWB51911.1
Location 2130-2432
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCATCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG
Protein Sequence MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQAQMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN

References More References in PubMed

1

Characterization of a New Monopartite Begomovirus with a Betasatellite Associated with Leaf Curl, Yellow Vein, and Vein Enation in Hibiscus rosa-sinensis.

Huang CH, et al.  Plant Dis. 2020 May;104(5):1318-1327. doi: 10.1094/PDIS-06-19-1223-RE. Epub 2020 Mar 16.

PMID: 32181724
2

Characterization of begomovirus components from a weed suggests that begomoviruses may associate with multiple distinct DNA satellites.

Mubin M, et al.  Virus Genes. 2010 Jun;40(3):452-7. doi: 10.1007/s11262-010-0470-y. Epub 2010 Mar 20.

PMID: 20306125
3

Distribution, epidemiology and molecular variability of the begomovirus complexes associated with yellow vein mosaic disease of mesta in India.

Roy A, et al.  Virus Res. 2009 May;141(2):237-46. doi: 10.1016/j.virusres.2008.11.022. Epub 2009 Jan 31.

PMID: 19428737
4

Association of a Disease Complex Involving a Begomovirus, DNA 1 and a Distinct DNA Beta with Leaf Curl Disease of Okra in Pakistan.

Mansoor S, et al.  Plant Dis. 2001 Aug;85(8):922. doi: 10.1094/PDIS.2001.85.8.922B.

PMID: 30823073
5

A new monopartite begomovirus isolated from Hibiscus cannabinus L. in India.

Chatterjee A, et al.  Arch Virol. 2007;152(11):2113-8. doi: 10.1007/s00705-007-1029-7. Epub 2007 Jul 6.

PMID: 17619113
6

Sequence variability and phylogenetic relationship of betasatellite isolates associated with yellow vein mosaic disease of mesta in India.

Das S, et al.  Virus Genes. 2008 Dec;37(3):414-24. doi: 10.1007/s11262-008-0287-0. Epub 2008 Sep 20.

PMID: 18807163