Hibiscus yellow vein leaf curl virus
Basic Information
Genomic Organization
JBrowse
Genome
CCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCTATCAAATATCTTCAGTTACTCTCTGAAGGCTATTCTCCGGATACGGTTGGTTACGATCTAATACGTGAATTAATTTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGCGAGGGTCCATGTAAGGTTCAGTCATTTGAGTCTAGACACGACGTAGTCCATATAGGTAAGGTTATGTGTATTAGTGATGTCACCCGTGGTACAGGTCTGACCCATAGAGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTATGTTTTGGGTAAGATATGGATGGATGAAAATATTAAGACCAAGAATCATACGAATAATGTTATGTTCTTCCTTGTTCGTGATCGACGTCCGACCGGCACGCCCCAGGATTTTGGAGAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTAAAGAATGTGCATCGAGATCGTTACCAGGTTCTTAGGAAATGGTATGCAACCGTCACTGGTGGACAGTATGCTGCAAAGGAGCAGGCGTTGGTTAAGAAATTTATTAAGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATACGAGAACCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACGCATGCCTCTAATCCTGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGATATTAATAAAGATCGAATTTTATTTCTGAATTCATGTCTACATACATTGTTTGCTCTATCTTTCTCCATAATACATGATCTACAGCTCTTATAATTGCGTTAATTGAGATTACACCTAGATTGTTGAGATATTTGAGGACTTGTGTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGGCGTAAGGTCGTCCAGATTCGGTAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTTATTGTTATGATGTCCATGTTCATCGTGAATGGACGGTCGGCGTGGTTGAGGATCTTGAAATAAAGGGGATTTGGAACCTCCCAGATATAGGCGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTAAATCCATGGTCGTAGCAGTTGATTGACAGAAAATAAGAACAGCCGCATTCAAGATCTACTCTCTTCCTCCTGTTGCGTTTCTTCGCTTCCCTGTGCTGTACTTTGATTGGATCCTGAGTATAGTGGTCTTTCGAGGGTGACGAAGATCGCATTCTTGAGGGTCCAGTTTTTTAGTGCGGTGTTCTTTTCCTCGTCGAGGAATTCTTTATAGCTGCTGTTGGGACCAGGATTGCAAAGGAAGATTGTGGGTATCCCGCCTTTAATTTGAACTGGTTTTCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATTACGTTGTACCAGGCGTCGTTACTGTATACTTTGGGACTCAGGTCCAGATGTCCGCACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCTTTCCCGTACGACTATCTCCCTCAATTACTATACTCCGAGGTCTAAGGGGCCGCGCAGCGGCATCGACAACGTTATCCAACGCCCAAACTTCAAGTGCTTCTGGAACTTGATCGAACGAAGAAGAAGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGATGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGACTTTGATGTATTTTTTATTCGAGGGTGTGTTGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCTTGTATTTTAAAACGCTTGGGGGGAGCCATTGACTTTGGTCAATTGGAGACAACTGATTTCATTTTACTCTGGCAATTGGAGACAGGAGACAATATATAGTGTCTCCAAATGGCATTATCGTAATTTGAGAAATCATTTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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AWB51906.1
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Location
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119-466 |
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Gene Name
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V2 |
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Protein Name
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V2 protein |
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Coding Region
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ATGTGGGATCCACTCTTAAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTTCTATCAAATATCTTCAGTTACTCTCTGAAGGCTATTCTCCGGATACGGTTGGTTACGATCTAATACGTGAATTAATTTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
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Protein Sequence
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MWDPLLNEFPETVHGFRCMLSIKYLQLLSEGYSPDTVGYDLIRELISILRSRNYVEASCRYRNFYPRVEGASSSELRQPLLNPCSCPYCPRHKISNVGEQAHESQAQNVQDVQKP |
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NCBI Accession
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AWB51907.1
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Location
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279-1049 |
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Gene Name
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V1 |
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Protein Name
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V1 protein |
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Coding Region
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ATGTCGAAGCGTCCTGCAGATATCGTAATTTCTACCCCCGCGTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCTTACTCAACCCGTGTAGCTGTCCCTACTGTCCGCGTCACAAAATCTCGAATGTGGGCGAACAGGCCCACGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGTTGCGAGGGTCCATGTAAGGTTCAGTCATTTGAGTCTAGACACGACGTAGTCCATATAGGTAAGGTTATGTGTATTAGTGATGTCACCCGTGGTACAGGTCTGACCCATAGAGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTATGTTTTGGGTAAGATATGGATGGATGAAAATATTAAGACCAAGAATCATACGAATAATGTTATGTTCTTCCTTGTTCGTGATCGACGTCCGACCGGCACGCCCCAGGATTTTGGAGAAGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCTACTGTAAAGAATGTGCATCGAGATCGTTACCAGGTTCTTAGGAAATGGTATGCAACCGTCACTGGTGGACAGTATGCTGCAAAGGAGCAGGCGTTGGTTAAGAAATTTATTAAGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATACGAGAACCATTCTGAGAATGCCTTGATGTTGTATATGGCATGTACGCATGCCTCTAATCCTGTTTACGCTACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGA |
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Protein Sequence
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MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWANRPTNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPTGTPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWYATVTGGQYAAKEQALVKKFIKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
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NCBI Accession
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AWB51908.1
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Location
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1052-1456 |
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Gene Name
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C3 |
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Protein Name
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C3 protein |
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Coding Region
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ATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCCTCAACCACGCCGACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTACCGAATCTGGACGACCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAACACAAGTCCTCAAATATCTCAACAATCTAGGTGTAATCTCAATTAACGCAATTATAAGAGCTGTAGATCATGTATTATGGAGAAAGATAGAGCAAACAATGTATGTAGACATGAATTCAGAAATAAAATTCGATCTTTATTAA |
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Protein Sequence
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MDLRTGEPITAAQAWNGAYIWEVPNPLYFKILNHADRPFTMNMDIITIRIQFNYNLRKALGVHKCFLTYRIWTTLRPQTGLFLRVFKTQVLKYLNNLGVISINAIIRAVDHVLWRKIEQTMYVDMNSEIKFDLY |
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NCBI Accession
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AWB51909.1
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Location
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1149-1601 |
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Gene Name
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C2 |
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Protein Name
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C2 protein |
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Coding Region
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ATGCGATCTTCGTCACCCTCGAAAGACCACTATACTCAGGATCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAAGAGAGTAGATCTTGAATGCGGCTGTTCTTATTTTCTGTCAATCAACTGCTACGACCATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATCCTCAACCACGCCGACCGTCCATTCACGATGAACATGGACATCATAACAATAAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTACCGAATCTGGACGACCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTCAAAACACAAGTCCTCAAATATCTCAACAATCTAGGTGTAATCTCAATTAA |
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Protein Sequence
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MRSSSPSKDHYTQDPIKVQHREAKKRNRRKRVDLECGCSYFLSINCYDHGFTHRGTHHCSSSMEWRLYLGGSKSPLFQDPQPRRPSIHDEHGHHNNKDPIQLQPSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNTSPQISQQSRCNLN |
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NCBI Accession
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AWB51910.1
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Location
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1498-2589 |
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Gene Name
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C1 |
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Protein Name
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C1 protein |
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Coding Region
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ATGGCTCCCCCCAAGCGTTTTAAAATACAAGCCAAAAATTATTTCCTCACTTATCCACAGTGCTCACTCACTAAAGAGGAAGCACTTTCCCAAATTCAAGCCATCAACACACCCTCGAATAAAAAATACATCAAAGTCTGCAGAGAGTTACACGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCATCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCTTCTTCTTCGTTCGATCAAGTTCCAGAAGCACTTGAAGTTTGGGCGTTGGATAACGTTGTCGATGCCGCTGCGCGGCCCCTTAGACCTCGGAGTATAGTAATTGAGGGAGATAGTCGTACGGGAAAGACGATGTGGGCTAGGTCATTGGGACCACATAACTATTTGTGCGGACATCTGGACCTGAGTCCCAAAGTATACAGTAACGACGCCTGGTACAACGTAATTGATGACGTCGACCCGCATTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAGTCCAACACAAAATACGGAAAACCAGTTCAAATTAAAGGCGGGATACCCACAATCTTCCTTTGCAATCCTGGTCCCAACAGCAGCTATAAAGAATTCCTCGACGAGGAAAAGAACACCGCACTAAAAAACTGGACCCTCAAGAATGCGATCTTCGTCACCCTCGAAAGACCACTATACTCAGGATCCAATCAAAGTACAGCACAGGGAAGCGAAGAAACGCAACAGGAGGAAGAGAGTAGATCTTGA |
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Protein Sequence
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MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIKVCRELHEDGSPHLHVLIQFEGKFICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEALEVWALDNVVDAAARPLRPRSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTLKNAIFVTLERPLYSGSNQSTAQGSEETQQEEESRS |
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NCBI Accession
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AWB51911.1
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Location
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2130-2432 |
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Gene Name
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C4 |
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Protein Name
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C4 protein |
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Coding Region
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ATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGCAAATTCATCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGATGTCAAGGACTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCGCTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG |
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Protein Sequence
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MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQAQMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN |