Genus | Begomovirus |
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NCBI Assembly | GCF_000882835.1 |
Isolate | Brazil |
Release date | 2015/2/22 |
Submitter | Fernandes,F.R., Albuquerque,L.C., de Oliveira,C.L., Cruz,A.R., da Rocha,W.B., Pereira,T.G., Naito,F.Y., Dias Nde,M., Nagata,T., Faria,J.C., Zerbini,F.M., Aragao,F.J., Inoue-Nagata,A.K., Sousa,A.R.R.C., Aragao,F.J.L. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_002791011.1 |
---|---|
Location | 226-975 |
Gene Name | AV1 |
Protein Name | CP |
Coding Region | ATGCCTAAGCGAGATGCCCCATGGCGATTAATGGCGGGGACCTCCAAGGTCAGTCGTAATGTCAATTATTCGCCCCGTGGTGGTCCTAAAATAGACAAGGCCTCTTCATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTATCGCATGTATAGAGGCCCAGATGTTCCGAAGGGATGTGAAGGGCCTTGTAAGGTCCAGTCATACGAGTCTCGACATGACGTTTCCCATGTTGGGAAAGTGATATGTGTATCCGACGTGACACGGGGCAATGGTATTACGCATCGTGTGGGCAAGCGTTTCTGCGTCAAGTCTGTGTACATTCTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAATAGCGTCATGTTCTGGTTGGTGCGAGATCGTCGACCATATAGCTCTCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAACCCAGTACAGCTACCGTGAAGAACGATCTCCGCGATCGCTTCCAAGTGATGCACAAGTTTTACGCGAAGGTCACTGGTGGACAATATGCGAGCAACGAGCAGGCGATCGTCAAACGTTTTTGGAAGGTCAACAACTATGTGGTGTATAACCACCAAGAGGCAGGGAAATACGAGAATCATACGGAGAACGCGTTACTATTATATATGGCATGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MPKRDAPWRLMAGTSKVSRNVNYSPRGGPKIDKASSWVNRPMYRKPRIYRMYRGPDVPKGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRFCVKSVYILGKIWMDETIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_002791012.1 |
---|---|
Location | 972-1370 |
Gene Name | AC3 |
Protein Name | REn |
Coding Region | ATGGATTTAAGCACCGGGGAATTCATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATCGGGGTGGAGGACCCGATATACACGTCACTCCGGATATACCACATCCAGATCCGGTTCAATTACAACCTCAGGAGGGCACTGAATCTACGCAAAGCTTTCCTGAACTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGGATGACTTATTTAAGTAGATTCAGGCATTTAGTTTTAATGTATTTAGATCAATTGGGTGTCGTCGGTCTTAATCATGTAATTAGGGCTGTTCGTTTCGCAACTGATCGCTCATATGTAAATGATGTACTCGAGAATCATGAAATAAAATTCAATTTTTATTAA |
Protein Sequence | MDLSTGEFITVSQAENSVFIWEVPNPLYFKIIGVEDPIYTSLRIYHIQIRFNYNLRRALNLRKAFLNFQVWTTSIRASGMTYLSRFRHLVLMYLDQLGVVGLNHVIRAVRFATDRSYVNDVLENHEIKFNFY |
NCBI Accession | YP_002791013.1 |
---|---|
Location | 1117-1506 |
Gene Name | AC2 |
Protein Name | TrAP |
Coding Region | ATGCTAAATTCATCTTCCTCCACGCCCCCCTCTATCAAAGCACAGCACCGAGTAGCCAAGAGGAGAGCTATACGTCGACGACGGATTGACTTGAACTGCGGCTGTTCCATATTTCTCCACATCGACTGTGCAGATTATGGATTTAAGCACCGGGGAATTCATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTTCCAAATCCCCTCTATTTCAAGATCATCGGGGTGGAGGACCCGATATACACGTCACTCCGGATATACCACATCCAGATCCGGTTCAATTACAACCTCAGGAGGGCACTGAATCTACGCAAAGCTTTCCTGAACTTCCAAGTCTGGACGACATCGATTCGAGCTTCTGGGATGACTTATTTAAGTAG |
Protein Sequence | MLNSSSSTPPSIKAQHRVAKRRAIRRRRIDLNCGCSIFLHIDCADYGFKHRGIHHCVSGREFRFYLGGSKSPLFQDHRGGGPDIHVTPDIPHPDPVQLQPQEGTESTQSFPELPSLDDIDSSFWDDLFK |
NCBI Accession | YP_002791014.1 |
---|---|
Location | 1418-2497 |
Gene Name | AC1 |
Protein Name | Rep |
Coding Region | ATGCCACGGAACCCTAATTCATTTCGCCTAACGGCCAAAAATATATTCCTCACTTATCCCCGGTGCGATATTCCGAAAGATGAAGTTCTGCAGTTGCTTCGGGACTTGCCATGGTCTGTCGTCAAGCCGACGTACATCCGAGTCGCTCGAGAGCTCCACGCCGATGGGTTCCCCCATCTCCACTGTCTTATTCAACTCTCCGGCAAGTCCAACATCAAGGACGCTAGGTTTTTCAACCTTACTCACCCCAGACGGTCTGCCGAATTTCACCCAAATGCGCAATCGGCCAAGGACGCCAACGCCGTCAAAAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGCCAATATAAGGTGTCTGGGGGTTCCAAGTCCAATAAAGATGACGTCTACCACAACGCTGTCAATGCAGCAACTGCAGGAGAGGCTCTCGACATAATAAGGGCTGGTGATCCGAGGACGTTCATCGTGAATTATCATAACGTCAAAGCTAACGTCGAGCGCCTCTTTCTGAAGCCACCCCTTCCTTGGGTTCCTCCATTTCAATTGTCGTCGTTTAACAATGTCCCGGACGATTTGCAAGAGTGGGCTGATGTTTATTTTGGAAGGGGTGCCGCTGCGCGGCCAGAGAGACCTATTAGTATTGTAGTCGAGGGGGATAGTCGAACGGGAAAGACCATGTGGGCTAGAGCTTTAGGCCCACATAATTATCTTAGTGGGCATCTCGATTTCAATTCTAGGGTTTACTCAAATGACGTTGAGTATAACGTCATTGATGATGTCGCTCCGCATTATCTAAAGTTAAAGCATTGGAAAGAGTTGATTGGGGCCCAAAGGGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGCGGGATACCATCAATCGTGCTGTGCAATCCAGGCGAGGGGGCTAGTTATAAAGACTTCCTCAACAAAGAGGAGAATGCATCGTTGAGAGCTTGGACACGCAAGAATGCTAAATTCATCTTCCTCCACGCCCCCCTCTATCAAAGCACAGCACCGAGTAGCCAAGAGGAGAGCTATACGTCGACGACGGATTGA |
Protein Sequence | MPRNPNSFRLTAKNIFLTYPRCDIPKDEVLQLLRDLPWSVVKPTYIRVARELHADGFPHLHCLIQLSGKSNIKDARFFNLTHPRRSAEFHPNAQSAKDANAVKNYITKEGDYCESGQYKVSGGSKSNKDDVYHNAVNAATAGEALDIIRAGDPRTFIVNYHNVKANVERLFLKPPLPWVPPFQLSSFNNVPDDLQEWADVYFGRGAAARPERPISIVVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNDVEYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRAWTRKNAKFIFLHAPLYQSTAPSSQEESYTSTTD |
NCBI Accession | YP_002791015.2 |
---|---|
Location | 450-1220 |
Gene Name | BV1 |
Protein Name | NS |
Coding Region | ATGTATACGACTAAGTATAGACGTGGTGGGTCATCTTCTAAGCGACGAGGGTATTCACGATATCCAGCGTTTAAGCGAATGCAGAATGGAAAACGTTCCGAATGGAGACGTCGACCCAGCAGTCCTTGTAAGGCACATGACGATATTAAGTGGACGGCCCAATGTATACATGAAGATCAATTCGGCCCAGAATTTGTATTGGGCCATAATATAGCTACGTCGACCTATATTAGCTACCCTAGTATGAGTAAGACTGAACCGAACCGATCCCGATCGTATATTAAGTTGCGGCGTCTACGCTTTAAGGGCACTCTGAAGGTCGAGCGTGTACACGTCGATGTTAACATGATCGGTTCGAATGCAAAGATAGAAGGCGTATTCTCTATGGTCGTTATTGTCGACCGTAAACCTCACTTGGGTCCAACTGGATGCCTTCATACATTTGATGAGGTCTTTGGCGCCAGGATCCACAGTCATGGAAATCTAACCGTCAGTCCTTCTTTGAAGGATCGGTACTACATCCGCCACGTATTCAAGCGCGTCATATCTGTCGAGAAAGACACGATGATGGTGGATATAGAAGGGTCGACGTGTTTATCTACTAGGCGTTCTTCTTGCTGGGCTACTTTTAAGGATACGGAACGAGACTCATGTAATGGTGTATATGCGAATATAAGCAAGAACGCCATATTAGTGTATTATTGCTGGATGTCGGATCATATGTCCAAGGCATCTACATTTGTATCATTTGACCTCGATTATGTCGGATGA |
Protein Sequence | MYTTKYRRGGSSSKRRGYSRYPAFKRMQNGKRSEWRRRPSSPCKAHDDIKWTAQCIHEDQFGPEFVLGHNIATSTYISYPSMSKTEPNRSRSYIKLRRLRFKGTLKVERVHVDVNMIGSNAKIEGVFSMVVIVDRKPHLGPTGCLHTFDEVFGARIHSHGNLTVSPSLKDRYYIRHVFKRVISVEKDTMMVDIEGSTCLSTRRSSCWATFKDTERDSCNGVYANISKNAILVYYCWMSDHMSKASTFVSFDLDYVG |
NCBI Accession | YP_004935367.1 |
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Location | 1315-2199 |
Protein Name | BC1 |
Coding Region | ATGGAGGGGTCTCAGTTAGTAAATCCGCCGAGCGCTTTCAATTACATAGAGTCACATCGTGACGAGTATCAGCTATCGCATGACCTAACTGAGATAGTCTTGCAATTCCCCTCAACGGCGTCTCAATTAGGAGCCCGACTCTCACGCAGCTGCATGAAGATCGACCATTGCGTAATAGAATATAGGCAACAAGTGCCAATTAATGCGTCGGGCTCGGTAGTAGTGGAGATTCACGACAAGAGAATGACGGACAATGAGTCCTTACAGGCGTCATGGACATTCCCCATACGATGTAACATAGATCTCCACTACTTTTCATCTTCATTCTTCTCACTCAAAGACCCAATTCCTTGGAAACTATATTATAAGGTTTGCGACTCGAACGTCCATCAGAGGACGCATTTCGCGAAGTTCAAGGGTAAACTGAAGTTATCGACGGCAAAACATTCCGTTGATATCCCTTTCAGAGCGCCAACTGTCAAGATCCTGTCCAAACAGTTTACAGATAAGGATATCGACTTCAGTCATGTGGGCTACGGCAAATGGGAGAGAAGAATGATTAGATCCGCATCATCATCGAGACTTGGGCTACAAGGCCCAATTGAAATAAGGCCCGGTGAATCATGGGCCACAAGGTCTACTATAGGACTGGGCCATTTAGATGCGGATTCAGATGTGAGAGACGCCTCTTACCCATATCGGGAGTTAAATAGGCTAGGGACTCCCGTATTAGACCCGGGAGATTCAGCTTCCGTAGTAGCTGCTCAGAGAACACATTCGAACATATCGATGTCAATGGGTCAGCTGAACGAGATAGTTAGGTCAACCGTTCAGGAATGTATCAGCACTAATTGTATTCCTCCCAGAAATAAAACGCTTGATTAA |
Protein Sequence | MEGSQLVNPPSAFNYIESHRDEYQLSHDLTEIVLQFPSTASQLGARLSRSCMKIDHCVIEYRQQVPINASGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYKVCDSNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDIDFSHVGYGKWERRMIRSASSSRLGLQGPIEIRPGESWATRSTIGLGHLDADSDVRDASYPYRELNRLGTPVLDPGDSASVVAAQRTHSNISMSMGQLNEIVRSTVQECISTNCIPPRNKTLD |
1 |
Mar TB, et al. J Gen Virol. 2017 Jun;98(6):1552-1562. doi: 10.1099/jgv.0.000814. Epub 2017 Jun 8. PMID: 28590236 |
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2 |
Detection of Poinsettia mosaic virus Infecting Poinsettias (Euphorbia pulcherrima) in Venezuela. Carballo O, et al. Plant Dis. 2001 Nov;85(11):1208. doi: 10.1094/PDIS.2001.85.11.1208D. PMID: 30823179 |
3 |
Mar TB, et al. J Gen Virol. 2017 Jun;98(6):1537-1551. doi: 10.1099/jgv.0.000784. Epub 2017 Jun 13. PMID: 28612702 |
4 |
Fernandes FR, et al. Arch Virol. 2011 Nov;156(11):2063-9. doi: 10.1007/s00705-011-1070-4. Epub 2011 Jul 22. PMID: 21779908 |
5 |
Pramesh D, et al. Arch Virol. 2013 Mar;158(3):531-42. doi: 10.1007/s00705-012-1511-8. Epub 2012 Oct 25. PMID: 23096697 |
6 |
The recombination mediator RAD51D promotes geminiviral infection. Richter KS, et al. Virology. 2016 Jun;493:113-27. doi: 10.1016/j.virol.2016.03.014. Epub 2016 Mar 26. PMID: 27018825 |
7 |
The contribution of translesion synthesis polymerases on geminiviral replication. Richter KS, et al. Virology. 2016 Jan 15;488:137-48. doi: 10.1016/j.virol.2015.10.027. Epub 2015 Nov 27. PMID: 26638018 |
8 |
Commodity risk assessment of Petunia spp. and Calibrachoa spp. unrooted cuttings from Costa Rica. EFSA Panel on Plant Health (PLH), et al. EFSA J. 2024 Nov 11;22(11):e9064. doi: 10.2903/j.efsa.2024.9064. eCollection 2024 Nov. PMID: 39529754 |
9 |
Nebreda M, et al. Virus Res. 2004 Mar;100(1):83-8. doi: 10.1016/j.virusres.2003.12.016. PMID: 15036838 |
10 |
KU80, a key factor for non-homologous end-joining, retards geminivirus multiplication. Richter KS, et al. J Gen Virol. 2015 Sep;96(9):2913-2918. doi: 10.1099/jgv.0.000224. Epub 2015 Jun 25. PMID: 26297035 |