Eupatorium yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002822325.1
Isolate Japan: Yamaguchi prefecture
Release date 2019/6/28
Submitter Kitamura,K., Murayama,A., Ikegami,M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_043119
ACCGGATGGCCGCCGATTTTTTTAATGAGCCCTCCTGTCGGTTGATCCTGACCATCCTTTGAAGCCTAATTAAATACTTGTCCCCTAAGTCTTTTTCGTATTTAAATACGTATGCCCTAGCTTTATACTTGTATAATGTGGGATCCATTGCTTAACGAATTCCCTGAAACCGTTCACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAAGGTGTCGAGTCTACGTATTCTCCAGATACGATAGGATACGATCTCATACGTGATCTTATTGCAGTCGTTCGTGCCAAGAACTATGTCGAAGCGTCCTGCCGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGGCTCAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGAACATGGGCTCAAAGGCCCATGTATCGGAAGCCCAGGATGTACCGAATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAACGATGTTGGTCATTCTGGTACATTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGGAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAGAACATCAAGACTAAAAACCACACTAATACTGTCATGTTTTGGTTAGTTAGAGATAGACGTCCTGTTACTACTCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAATGAACCCAGTACAGCAACTATCAAGCAGGATCTAAGGGATCGTTTGCAGGTTCTACACAAGTTCAGTGCTACTGTCACTGGTGGACAGTATGCGTCTAAGGAACAGGCAATCGTCAAGAAGTTCTGGAAGTTGAATCATCATGTGACATACAACCATCAAGAGAGTGCTAAATATGAGAATCATACTGAGAATGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGATCTATTTTTATGATTCTGTTCAGAATTAATAAACTTTGAATTTTATATCATGAAATGTCTGTACATATATTGTTCCTTGCAATCTATTATACAAAACATGATCAACTGCTCTAATTACATTATTAATTGAAATCACACCCAAACTATCTAAGTAGTTCATTACTTGTGTCCTAAAGACCCTCAAGAAACGCCATGTCTGAGGATGTAAGCGACTCCAGATCTTGAAAATCAGGAAACACTTGTGCAAACCCAGCTGGGATCTCAGGTTGTGGTTGAACTGTATCTGTAATGTTATCACGTCCTGATCTCTGTTGAATGACTGTTGATCGTGCCTGGTGATTTTGAAATAGAGGGGATTTGGTACTGTCCAGATATACGCGCCACTCTGCGCCTGAGCTGCAGTAATGATGGTCCCTGTGCGTGAATCCATAATTTGCACAGTCTAAGCTCACGTAGACAGAACACCCGCAGCCTAGGTCAATCCTCCGCCTGCGAAGGTTCTTCTTCTTGGCTATCCTGTGCTGGACTTTGATGGGCACCTGAGTAGAGTGGGCTGTAGAGGGTGACGAAGGTTGCATTTTTTATAGCCCAGGCTTTTAATGCGGAGTTCTTTTCTTCGTCTAGAAACTCCGTATATGAAGACGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGTCTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAATGCTTTAGATAGTGGGGGTCTACATCATCAACGACGTTGTACCATGCGCCATTGCTGTAGATCTTCGGACTCAGGTCCAGATGACCACATAGATAGTTATGAGGACCCAATGACCTAGCCCACATTGTCTTGCCTGTCCTACTGTCACCCTCTATCACAATACTCATCGGTCTCCATGGCCGCGCAGCGGAAGACTTCACGTTTTCTGCAGCCCATTCCTCAATTTCCTCAGGAACTTGATCAAATGAAGAACTAGAAAAAGGACAAACAAAAACCTCCAACGGAGGAGCAAAAATCCTATCTAAATTGCTATTTAAATTATGAAACTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGTGCCGATGACTTAGATCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCATTTTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACTCCAGAATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTCTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGAAACGAGATCGAAGAATCTTTGATTTCTGCAGGTGTATTTGCCTTCGAACTGGATGAGGACGTGGAGATGAGGGCTCCCATCTTCGTGCAGTTCACGACAGATTCGTATAAACAATTTATTTGTTGGGGTTTGGAGTTGTTTGATCTGCGAGAGTGCTTCCTCTTTTGTAAGAGAGCAGTGTGGATATGTGAGAAAAAAGTTTTTCGCATTTATTTTAAAACGATTTGGAGTAGGCATGTTGACCGGTCAATCGGAGGCTCTCAAAGTTCTATGGAATTGGGGGCAATGGGGGCGCATTTATAGTATAGCCCCCAAATGGCATTTCCGTAATTTCTGGGGGTAGGAGCGTGTCTTTTTGAAATTCAAAATCGCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009664841.1
Location 136-486
Gene Name V2
Protein Name hypothetical protein
Coding Region ATGTGGGATCCATTGCTTAACGAATTCCCTGAAACCGTTCACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAAGGTGTCGAGTCTACGTATTCTCCAGATACGATAGGATACGATCTCATACGTGATCTTATTGCAGTCGTTCGTGCCAAGAACTATGTCGAAGCGTCCTGCCGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGGCTCAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGAACATGGGCTCAAAGGCCCATGTATCGGAAGCCCAGGATGTACCGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQGVESTYSPDTIGYDLIRDLIAVVRAKNYVEASCRYSDFHTRLQGTSPAQLRQPVCQPCECPHCPRHKQKENMGSKAHVSEAQDVPNVQKP

NCBI Accession YP_009664842.1
Location 269-553
Gene Name C5
Protein Name hypothetical protein
Coding Region ATGACCAACATCGTTTTTCTTCTCAAACGACTGGACCTTACACGGGCCTTCACAACCCTTAGGAACATCAGGGCTTCTGTACATTCGGTACATCCTGGGCTTCCGATACATGGGCCTTTGAGCCCATGTTCTCCTTCTGTTTGTGACGAGGACAGTGGGGGCATTCGCACGGCTGACATACGGGCTGTCGAAGTTGAGCCGGCGACGTACCTTGGAGGCGGGTGTGGAAATCACTATATCGGCAGGACGCTTCGACATAGTTCTTGGCACGAACGACTGCAATAA
Protein Sequence MTNIVFLLKRLDLTRAFTTLRNIRASVHSVHPGLPIHGPLSPCSPSVCDEDSGGIRTADIRAVEVEPATYLGGGCGNHYIGRTLRHSSWHERLQ

NCBI Accession YP_009664843.1
Location 296-1069
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCCGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGGCTCAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGAACATGGGCTCAAAGGCCCATGTATCGGAAGCCCAGGATGTACCGAATGTACAGAAGCCCTGATGTTCCTAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAACGATGTTGGTCATTCTGGTACATTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGGAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAGAACATCAAGACTAAAAACCACACTAATACTGTCATGTTTTGGTTAGTTAGAGATAGACGTCCTGTTACTACTCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAATGAACCCAGTACAGCAACTATCAAGCAGGATCTAAGGGATCGTTTGCAGGTTCTACACAAGTTCAGTGCTACTGTCACTGGTGGACAGTATGCGTCTAAGGAACAGGCAATCGTCAAGAAGTTCTGGAAGTTGAATCATCATGTGACATACAACCATCAAGAGAGTGCTAAATATGAGAATCATACTGAGAATGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGATCTATTTTTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRANAPTVLVTNRRRTWAQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDVTRGNGLTHRSGKRFCIKSCYIIGKIWMDENIKTKNHTNTVMFWLVRDRRPVTTPYGFQEAFNMFDNEPSTATIKQDLRDRLQVLHKFSATVTGGQYASKEQAIVKKFWKLNHHVTYNHQESAKYENHTENALILYMASTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_009664844.1
Location 1066-1470
Gene Name C3
Protein Name hypothetical protein
Coding Region ATGGATTCACGCACAGGGACCATCATTACTGCAGCTCAGGCGCAGAGTGGCGCGTATATCTGGACAGTACCAAATCCCCTCTATTTCAAAATCACCAGGCACGATCAACAGTCATTCAACAGAGATCAGGACGTGATAACATTACAGATACAGTTCAACCACAACCTGAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTGATTTTCAAGATCTGGAGTCGCTTACATCCTCAGACATGGCGTTTCTTGAGGGTCTTTAGGACACAAGTAATGAACTACTTAGATAGTTTGGGTGTGATTTCAATTAATAATGTAATTAGAGCAGTTGATCATGTTTTGTATAATAGATTGCAAGGAACAATATATGTACAGACATTTCATGATATAAAATTCAAAGTTTATTAA
Protein Sequence MDSRTGTIITAAQAQSGAYIWTVPNPLYFKITRHDQQSFNRDQDVITLQIQFNHNLRSQLGLHKCFLIFKIWSRLHPQTWRFLRVFRTQVMNYLDSLGVISINNVIRAVDHVLYNRLQGTIYVQTFHDIKFKVY

NCBI Accession YP_009664845.1
Location 1211-1618
Gene Name C2
Protein Name hypothetical protein
Coding Region ATGCAACCTTCGTCACCCTCTACAGCCCACTCTACTCAGGTGCCCATCAAAGTCCAGCACAGGATAGCCAAGAAGAAGAACCTTCGCAGGCGGAGGATTGACCTAGGCTGCGGGTGTTCTGTCTACGTGAGCTTAGACTGTGCAAATTATGGATTCACGCACAGGGACCATCATTACTGCAGCTCAGGCGCAGAGTGGCGCGTATATCTGGACAGTACCAAATCCCCTCTATTTCAAAATCACCAGGCACGATCAACAGTCATTCAACAGAGATCAGGACGTGATAACATTACAGATACAGTTCAACCACAACCTGAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTGATTTTCAAGATCTGGAGTCGCTTACATCCTCAGACATGGCGTTTCTTGAGGGTCTTTAG
Protein Sequence MQPSSPSTAHSTQVPIKVQHRIAKKKNLRRRRIDLGCGCSVYVSLDCANYGFTHRDHHYCSSGAEWRVYLDSTKSPLFQNHQARSTVIQQRSGRDNITDTVQPQPEIPAGFAQVFPDFQDLESLTSSDMAFLEGL

NCBI Accession YP_009664846.1
Location 1518-2606
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTACTCCAAATCGTTTTAAAATAAATGCGAAAAACTTTTTTCTCACATATCCACACTGCTCTCTTACAAAAGAGGAAGCACTCTCGCAGATCAAACAACTCCAAACCCCAACAAATAAATTGTTTATACGAATCTGTCGTGAACTGCACGAAGATGGGAGCCCTCATCTCCACGTCCTCATCCAGTTCGAAGGCAAATACACCTGCAGAAATCAAAGATTCTTCGATCTCGTTTCCCCAAACAGATCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGACCTACATGGAGAAAGACGGAGACATCCTTGATTCTGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAAAATGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCTAAGTCATCGGCACTCAATATATTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAGTTTCATAATTTAAATAGCAATTTAGATAGGATTTTTGCTCCTCCGTTGGAGGTTTTTGTTTGTCCTTTTTCTAGTTCTTCATTTGATCAAGTTCCTGAGGAAATTGAGGAATGGGCTGCAGAAAACGTGAAGTCTTCCGCTGCGCGGCCATGGAGACCGATGAGTATTGTGATAGAGGGTGACAGTAGGACAGGCAAGACAATGTGGGCTAGGTCATTGGGTCCTCATAACTATCTATGTGGTCATCTGGACCTGAGTCCGAAGATCTACAGCAATGGCGCATGGTACAACGTCGTTGATGATGTAGACCCCCACTATCTAAAGCATTTCAAGGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAGACCAATTCAAATTAAAGGTGGAATCCCAACAATCTTCCTCTGCAATCCAGGACCAACGTCTTCATATACGGAGTTTCTAGACGAAGAAAAGAACTCCGCATTAAAAGCCTGGGCTATAAAAAATGCAACCTTCGTCACCCTCTACAGCCCACTCTACTCAGGTGCCCATCAAAGTCCAGCACAGGATAGCCAAGAAGAAGAACCTTCGCAGGCGGAGGATTGA
Protein Sequence MPTPNRFKINAKNFFLTYPHCSLTKEEALSQIKQLQTPTNKLFIRICRELHEDGSPHLHVLIQFEGKYTCRNQRFFDLVSPNRSAHFHPNIQAAKSSSDVKTYMEKDGDILDSGVFQVDGRSARGGCQNANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNSNLDRIFAPPLEVFVCPFSSSSFDQVPEEIEEWAAENVKSSAARPWRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNGAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGRPIQIKGGIPTIFLCNPGPTSSYTEFLDEEKNSALKAWAIKNATFVTLYSPLYSGAHQSPAQDSQEEEPSQAED

NCBI Accession YP_009664847.1
Location 2156-2578
Gene Name C4
Protein Name hypothetical protein
Coding Region ATGCGAAAAACTTTTTTCTCACATATCCACACTGCTCTCTTACAAAAGAGGAAGCACTCTCGCAGATCAAACAACTCCAAACCCCAACAAATAAATTGTTTATACGAATCTGTCGTGAACTGCACGAAGATGGGAGCCCTCATCTCCACGTCCTCATCCAGTTCGAAGGCAAATACACCTGCAGAAATCAAAGATTCTTCGATCTCGTTTCCCCAAACAGATCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGACCTACATGGAGAAAGACGGAGACATCCTTGATTCTGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAAAATGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCTAAGTCATCGGCACTCAATATATTAA
Protein Sequence MRKTFFSHIHTALLQKRKHSRRSNNSKPQQINCLYESVVNCTKMGALISTSSSSSKANTPAEIKDSSISFPQTDQHISIRTFRRLKARQMSRPTWRKTETSLILEFSKSMDDQLEEVAKMPTTHMPRQSTQDLSHRHSIY

References More References in PubMed

1

Effects of Eupatorium yellow vein virus infection on photosynthetic rate, chlorophyll content and chloroplast structure in leaves of Eupatorium makinoi during leaf development.

Funayama-Noguchi S, et al.  Funct Plant Biol. 2006 Mar;33(2):165-175. doi: 10.1071/FP05172.

PMID: 32689223
2

Siegesbeckia yellow vein virus is a distinct begomovirus associated with a satellite DNA molecule.

Wu JB, et al.  Arch Virol. 2007;152(4):791-6. doi: 10.1007/s00705-006-0896-7. Epub 2006 Dec 28.

PMID: 17187292
3

Replication promiscuity of DNA-beta satellites associated with monopartite begomoviruses; deletion mutagenesis of the Ageratum yellow vein virus DNA-beta satellite localizes sequences involved in replication.

Saunders K, et al.  J Gen Virol. 2008 Dec;89(Pt 12):3165-3172. doi: 10.1099/vir.0.2008/003848-0.

PMID: 19008407
4

Evidence for recombination among isolates of Tobacco leaf curl Japan virus and Honeysuckle yellow vein mosaic virus.

Kitamura K, et al.  Arch Virol. 2004 Jun;149(6):1221-9. doi: 10.1007/s00705-003-0276-5. Epub 2004 Feb 16.

PMID: 15168208
5

Unique grouping of the Far East Asian begomovirus complex based on sequence analyses of the DNA-A genome and associated DNAbeta satellite molecules isolated from tomato, honeysuckle and Eupatorium plants in Japan.

Ueda S, et al.  Arch Virol. 2008;153(3):417-26. doi: 10.1007/s00705-007-0011-8. Epub 2008 Jan 4.

PMID: 18175045