Eupatorium yellow vein mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838325.1
Release date 2015/2/12
Submitter Onuki,M., Hanada,K.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003556
GTTGACTGGTCAATCGGTGTCTCTCAAAGTTCTATGCAATCGGTGTCTCTGGAGTCTTATTTATAGTAGAGACTCCAAATGGCATAAATGGTAATTATTGGGGGTAGGAGCGTGTCTTTTTGAATTTCAAATCGCCAAAGCGGCCATCCGTATAATATTACCGGATGGCCGCCGATTTTTTTTGTGGCCCCTCCCTGTCGGCTGATCCTGACCGTTCCTCAACGCTTAATTAAATACTGGTCCCCGTACGTCTTTAAGTATTTAATACTTGCGCCCTAAGCTTTATACGTGTATAATGTGGGATCCATTAGTTAACGAGTTCCCTGAAACCGTACACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAGCTTGTAGAATCTACGTATTCTCCAGATACGGTAGGTCGCGATCTTATTCGTGACCTAATACTTGTTATTCGTGCTAAGAATTATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGATATCCCTAAGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAATGATGTTGGTCATTCTGGTACTTTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGCAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAAAACATCAAGACTAAGAATCACACTAACACTGTCATGTTCTGGTTAGTTAGGGATAGACGTCCCCTTACAACCCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAACGAACCCAGTACAGCTACTATCAAGCAGGACCTAAGAGATCGTCTGCAGGTGTTACACAAGTTCCAGGCTACTGTCACTGGTGGACAGTATGCGTCCAAGGAACAGGCTGTGATCAAGAAGTTCTGGAAGATCAATCATCATGTTACTTACAATCATCAGGAGCAGGCTAAATATGAGAATCATACTGAGAACGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGTTCAGAATTAATAAATTTTATATTTTATATCATGAAATGTCCGTACATACAATGTTCCTTGTAATCTATTATACAATACATGATCAACTGCTCTAATTACATTATTAATTGAAATCACACCCAGACTATCTAAGTAGTTCATCACTTGTGTCCTAAAGACCCTCAAGAAATGCCATGTCTGAGGATGTAAGCGGCTCCAGATCTTGAAAATGAGGAAACACTTGTGCAAACCCAGCTGGGATCTGAGGTTGTGGTTGAACTGTATCTGTATTGTTATTACGTCTTGGTCCCTGTTGAATGATCGTTGATTGTGCCTCGTAATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCTCCATTCTGTGCCTGAGCTGCAGTGATGAGTATCCCTGTGCGTGAATCCATAGTTTGCACAGTCAAGTCCCACGAAGATAGAACACCCGCAGTTTAGATCAATCCTCCTCCTGCGGTTCTTCTTCTTCGATTTGGCTATCCTGTGCTGGACTTTGATGGGAACCTGAATAGAGTGGGCTGTAGAGGGTGACGAAGGTTGCATTTTTAACTGCCCAGGCTTTTAATGCGGAATTCTTTTCTTCGTCCAGAAATTCCGTATATGAAGACGTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCTTCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACATCGTTTTTCCTGTCCTACTGTCACCCTCTATGACAATACTAATCGGTCTCCATGGCCGCGCAGAAGACTTCACGTTTTCTGCAGCCCATTCCTCAAGTTCTTCAGGAACTTGATCAAATGAAGAACTAGAAAAAGGACAAACAAAAACCTCCAATGGAGGAGCAAAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGTGCCGATGACTTTGATCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCCCTAGCTGATCTTCCATCGACTTGGAAAACTCCAAAATCAAGGATGTCTCCGTCTTTCTCCATGTAGGACTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGACCTACTTGGGGATACGAGGTCGAAGAATCGTTGATTTTTGCATTGGTATTTTCCTTCGAATTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCATGTAATTCACGGCAGATTCTTATGAATTTTTTTGATATCGGTGTTTGGAGTTGCTTGATTTGTGAGAGTGCTTCTCCTTTAGTAAGAGAGCAGTGTGGGTATGTGAGGAAATAATTCTTTGCATTTATTTTAAAACGATTTGGGGCAGGCAT

Gene Information

NCBI Accession NP_619553.1
Location 296-646
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTTAACGAGTTCCCTGAAACCGTACACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAGCTTGTAGAATCTACGTATTCTCCAGATACGGTAGGTCGCGATCTTATTCGTGACCTAATACTTGTTATTCGTGCTAAGAATTATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAIKYLQLVESTYSPDTVGRDLIRDLILVIRAKNYVEASCRYSDFHTRLQGTSPSELRQPVCQPCECPHCPRHKQKEIMGSTAHVSEAQDVPNVQKP

NCBI Accession NP_619554.1
Location 456-1229
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGATATCCCTAAGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAATGATGTTGGTCATTCTGGTACTTTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGCAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAAAACATCAAGACTAAGAATCACACTAACACTGTCATGTTCTGGTTAGTTAGGGATAGACGTCCCCTTACAACCCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAACGAACCCAGTACAGCTACTATCAAGCAGGACCTAAGAGATCGTCTGCAGGTGTTACACAAGTTCCAGGCTACTGTCACTGGTGGACAGTATGCGTCCAAGGAACAGGCTGTGATCAAGAAGTTCTGGAAGATCAATCATCATGTTACTTACAATCATCAGGAGCAGGCTAAATATGAGAATCATACTGAGAACGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRANAPTVLVTNRRRSWAQRPMYRKPRMFRMYRSPDIPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDVTRGNGLTHRSGKRFCIKSCYIIGKIWMDENIKTKNHTNTVMFWLVRDRRPLTTPYGFQEAFNMFDNEPSTATIKQDLRDRLQVLHKFQATVTGGQYASKEQAVIKKFWKINHHVTYNHQEQAKYENHTENALILYMASTHASNPVYATLKIRFYFYDSVQN

NCBI Accession NP_619555.1
Location 1226-1630
Gene Name C3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGATACTCATCACTGCAGCTCAGGCACAGAATGGAGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATTACGAGGCACAATCAACGATCATTCAACAGGGACCAAGACGTAATAACAATACAGATACAGTTCAACCACAACCTCAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTCATTTTCAAGATCTGGAGCCGCTTACATCCTCAGACATGGCATTTCTTGAGGGTCTTTAGGACACAAGTGATGAACTACTTAGATAGTCTGGGTGTGATTTCAATTAATAATGTAATTAGAGCAGTTGATCATGTATTGTATAATAGATTACAAGGAACATTGTATGTACGGACATTTCATGATATAAAATATAAAATTTATTAA
Protein Sequence MDSRTGILITAAQAQNGEYIWRVPNPLYFKITRHNQRSFNRDQDVITIQIQFNHNLRSQLGLHKCFLIFKIWSRLHPQTWHFLRVFRTQVMNYLDSLGVISINNVIRAVDHVLYNRLQGTLYVRTFHDIKYKIY

NCBI Accession NP_619556.1
Location 1371-1781
Gene Name C2
Protein Name transcriptional transactivator protein
Coding Region ATGCAACCTTCGTCACCCTCTACAGCCCACTCTATTCAGGTTCCCATCAAAGTCCAGCACAGGATAGCCAAATCGAAGAAGAAGAACCGCAGGAGGAGGATTGATCTAAACTGCGGGTGTTCTATCTTCGTGGGACTTGACTGTGCAAACTATGGATTCACGCACAGGGATACTCATCACTGCAGCTCAGGCACAGAATGGAGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATTACGAGGCACAATCAACGATCATTCAACAGGGACCAAGACGTAATAACAATACAGATACAGTTCAACCACAACCTCAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTCATTTTCAAGATCTGGAGCCGCTTACATCCTCAGACATGGCATTTCTTGAGGGTCTTTAG
Protein Sequence MQPSSPSTAHSIQVPIKVQHRIAKSKKKNRRRRIDLNCGCSIFVGLDCANYGFTHRDTHHCSSGTEWRVYLEGSKSPLFQDYEAQSTIIQQGPRRNNNTDTVQPQPQIPAGFAQVFPHFQDLEPLTSSDMAFLEGL

NCBI Accession NP_619557.1
Location 1678-2766
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTGCCCCAAATCGTTTTAAAATAAATGCAAAGAATTATTTCCTCACATACCCACACTGCTCTCTTACTAAAGGAGAAGCACTCTCACAAATCAAGCAACTCCAAACACCGATATCAAAAAAATTCATAAGAATCTGCCGTGAATTACATGAAGATGGGAGCCCTCATCTCCACATCCTCATCCAATTCGAAGGAAAATACCAATGCAAAAATCAACGATTCTTCGACCTCGTATCCCCAAGTAGGTCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGTCCTACATGGAGAAAGACGGAGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGGGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCAAAGTCATCGGCACTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATTCAAATTTAGATAGGATTTTTGCTCCTCCATTGGAGGTTTTTGTTTGTCCTTTTTCTAGTTCTTCATTTGATCAAGTTCCTGAAGAACTTGAGGAATGGGCTGCAGAAAACGTGAAGTCTTCTGCGCGGCCATGGAGACCGATTAGTATTGTCATAGAGGGTGACAGTAGGACAGGAAAAACGATGTGGGCTAGGTCGTTAGGTCCACATAACTACCTATGCGGTCATCTGGATCTGAGTCCGAAGATCTACAGCAACGACGCATGGTACAACGTCGTTGATGATGTAGACCCCCACTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAGCCAATTCAAATTAAAGGTGGAATCCCAACAATCTTCCTCTGCAATCCAGGTCCAACGTCTTCATATACGGAATTTCTGGACGAAGAAAAGAATTCCGCATTAAAAGCCTGGGCAGTTAAAAATGCAACCTTCGTCACCCTCTACAGCCCACTCTATTCAGGTTCCCATCAAAGTCCAGCACAGGATAGCCAAATCGAAGAAGAAGAACCGCAGGAGGAGGATTGA
Protein Sequence MPAPNRFKINAKNYFLTYPHCSLTKGEALSQIKQLQTPISKKFIRICRELHEDGSPHLHILIQFEGKYQCKNQRFFDLVSPSRSAHFHPNIQAAKSSSDVKSYMEKDGDILDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDFVLQFHNLNSNLDRIFAPPLEVFVCPFSSSSFDQVPEELEEWAAENVKSSARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEFLDEEKNSALKAWAVKNATFVTLYSPLYSGSHQSPAQDSQIEEEEPQEED

NCBI Accession NP_619558.1
Location 2316-2615
Gene Name C4
Protein Name hypothetical protein
Coding Region ATGAAGATGGGAGCCCTCATCTCCACATCCTCATCCAATTCGAAGGAAAATACCAATGCAAAAATCAACGATTCTTCGACCTCGTATCCCCAAGTAGGTCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGTCCTACATGGAGAAAGACGGAGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGGGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCAAAGTCATCGGCACTCAATATATTAA
Protein Sequence MKMGALISTSSSNSKENTNAKINDSSTSYPQVGQHISIRTFRRLKARQMSSPTWRKTETSLILEFSKSMEDQLGEVANLPTTHMPRQSTQDQSHRHSIY

References More References in PubMed

1

Evidence for recombination among isolates of Tobacco leaf curl Japan virus and Honeysuckle yellow vein mosaic virus.

Kitamura K, et al.  Arch Virol. 2004 Jun;149(6):1221-9. doi: 10.1007/s00705-003-0276-5. Epub 2004 Feb 16.

PMID: 15168208

2

Unique grouping of the Far East Asian begomovirus complex based on sequence analyses of the DNA-A genome and associated DNAbeta satellite molecules isolated from tomato, honeysuckle and Eupatorium plants in Japan.

Ueda S, et al.  Arch Virol. 2008;153(3):417-26. doi: 10.1007/s00705-007-0011-8. Epub 2008 Jan 4.

PMID: 18175045