Eupatorium yellow vein mosaic virus
Basic Information
Genomic Organization
JBrowse
Genome
GTTGACTGGTCAATCGGTGTCTCTCAAAGTTCTATGCAATCGGTGTCTCTGGAGTCTTATTTATAGTAGAGACTCCAAATGGCATAAATGGTAATTATTGGGGGTAGGAGCGTGTCTTTTTGAATTTCAAATCGCCAAAGCGGCCATCCGTATAATATTACCGGATGGCCGCCGATTTTTTTTGTGGCCCCTCCCTGTCGGCTGATCCTGACCGTTCCTCAACGCTTAATTAAATACTGGTCCCCGTACGTCTTTAAGTATTTAATACTTGCGCCCTAAGCTTTATACGTGTATAATGTGGGATCCATTAGTTAACGAGTTCCCTGAAACCGTACACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAGCTTGTAGAATCTACGTATTCTCCAGATACGGTAGGTCGCGATCTTATTCGTGACCTAATACTTGTTATTCGTGCTAAGAATTATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGATATCCCTAAGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAATGATGTTGGTCATTCTGGTACTTTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGCAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAAAACATCAAGACTAAGAATCACACTAACACTGTCATGTTCTGGTTAGTTAGGGATAGACGTCCCCTTACAACCCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAACGAACCCAGTACAGCTACTATCAAGCAGGACCTAAGAGATCGTCTGCAGGTGTTACACAAGTTCCAGGCTACTGTCACTGGTGGACAGTATGCGTCCAAGGAACAGGCTGTGATCAAGAAGTTCTGGAAGATCAATCATCATGTTACTTACAATCATCAGGAGCAGGCTAAATATGAGAATCATACTGAGAACGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGTTCAGAATTAATAAATTTTATATTTTATATCATGAAATGTCCGTACATACAATGTTCCTTGTAATCTATTATACAATACATGATCAACTGCTCTAATTACATTATTAATTGAAATCACACCCAGACTATCTAAGTAGTTCATCACTTGTGTCCTAAAGACCCTCAAGAAATGCCATGTCTGAGGATGTAAGCGGCTCCAGATCTTGAAAATGAGGAAACACTTGTGCAAACCCAGCTGGGATCTGAGGTTGTGGTTGAACTGTATCTGTATTGTTATTACGTCTTGGTCCCTGTTGAATGATCGTTGATTGTGCCTCGTAATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCTCCATTCTGTGCCTGAGCTGCAGTGATGAGTATCCCTGTGCGTGAATCCATAGTTTGCACAGTCAAGTCCCACGAAGATAGAACACCCGCAGTTTAGATCAATCCTCCTCCTGCGGTTCTTCTTCTTCGATTTGGCTATCCTGTGCTGGACTTTGATGGGAACCTGAATAGAGTGGGCTGTAGAGGGTGACGAAGGTTGCATTTTTAACTGCCCAGGCTTTTAATGCGGAATTCTTTTCTTCGTCCAGAAATTCCGTATATGAAGACGTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTCTACATCATCAACGACGTTGTACCATGCGTCGTTGCTGTAGATCTTCGGACTCAGATCCAGATGACCGCATAGGTAGTTATGTGGACCTAACGACCTAGCCCACATCGTTTTTCCTGTCCTACTGTCACCCTCTATGACAATACTAATCGGTCTCCATGGCCGCGCAGAAGACTTCACGTTTTCTGCAGCCCATTCCTCAAGTTCTTCAGGAACTTGATCAAATGAAGAACTAGAAAAAGGACAAACAAAAACCTCCAATGGAGGAGCAAAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGTGCCGATGACTTTGATCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCCCTAGCTGATCTTCCATCGACTTGGAAAACTCCAAAATCAAGGATGTCTCCGTCTTTCTCCATGTAGGACTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGACCTACTTGGGGATACGAGGTCGAAGAATCGTTGATTTTTGCATTGGTATTTTCCTTCGAATTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCATGTAATTCACGGCAGATTCTTATGAATTTTTTTGATATCGGTGTTTGGAGTTGCTTGATTTGTGAGAGTGCTTCTCCTTTAGTAAGAGAGCAGTGTGGGTATGTGAGGAAATAATTCTTTGCATTTATTTTAAAACGATTTGGGGCAGGCAT
Gene Information
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NCBI Accession
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NP_619553.1
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Location
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296-646 |
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Gene Name
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V2 |
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Protein Name
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pre-coat protein |
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Coding Region
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ATGTGGGATCCATTAGTTAACGAGTTCCCTGAAACCGTACACGGTTTTAGGTGTATGCTTGCAATTAAATACCTACAGCTTGTAGAATCTACGTATTCTCCAGATACGGTAGGTCGCGATCTTATTCGTGACCTAATACTTGTTATTCGTGCTAAGAATTATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGA |
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Protein Sequence
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MWDPLVNEFPETVHGFRCMLAIKYLQLVESTYSPDTVGRDLIRDLILVIRAKNYVEASCRYSDFHTRLQGTSPSELRQPVCQPCECPHCPRHKQKEIMGSTAHVSEAQDVPNVQKP |
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NCBI Accession
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NP_619554.1
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Location
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456-1229 |
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Gene Name
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V1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGTCCTGCAGATATAGTGATTTCCACACCCGCCTCCAAGGTACGTCGCCGTCTGAACTTCGACAGCCCGTATGTCAGCCGTGCGAATGCCCCCACTGTCCTCGTCACAAACAGAAGGAGATCATGGGCTCAACGGCCCATGTATCGGAAGCCCAGGATGTTCCGAATGTACAGAAGCCCTGATATCCCTAAGGGCTGTGAAGGCCCGTGTAAGGTCCAGTCGTTTGAGAAGAAAAATGATGTTGGTCATTCTGGTACTTTGTTATGTGTTTCTGATGTTACTCGTGGTAACGGTCTTACTCATCGTTCTGGCAAGAGATTTTGTATAAAATCTTGTTATATTATTGGTAAAATCTGGATGGATGAAAACATCAAGACTAAGAATCACACTAACACTGTCATGTTCTGGTTAGTTAGGGATAGACGTCCCCTTACAACCCCGTATGGATTTCAAGAGGCATTCAACATGTTTGATAACGAACCCAGTACAGCTACTATCAAGCAGGACCTAAGAGATCGTCTGCAGGTGTTACACAAGTTCCAGGCTACTGTCACTGGTGGACAGTATGCGTCCAAGGAACAGGCTGTGATCAAGAAGTTCTGGAAGATCAATCATCATGTTACTTACAATCATCAGGAGCAGGCTAAATATGAGAATCATACTGAGAACGCATTAATATTGTATATGGCTAGTACTCATGCCAGTAATCCCGTGTATGCAACTTTGAAAATCAGGTTCTATTTTTATGATTCTGTTCAGAATTAA |
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Protein Sequence
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MSKRPADIVISTPASKVRRRLNFDSPYVSRANAPTVLVTNRRRSWAQRPMYRKPRMFRMYRSPDIPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDVTRGNGLTHRSGKRFCIKSCYIIGKIWMDENIKTKNHTNTVMFWLVRDRRPLTTPYGFQEAFNMFDNEPSTATIKQDLRDRLQVLHKFQATVTGGQYASKEQAVIKKFWKINHHVTYNHQEQAKYENHTENALILYMASTHASNPVYATLKIRFYFYDSVQN |
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NCBI Accession
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NP_619555.1
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Location
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1226-1630 |
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Gene Name
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C3 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGATACTCATCACTGCAGCTCAGGCACAGAATGGAGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATTACGAGGCACAATCAACGATCATTCAACAGGGACCAAGACGTAATAACAATACAGATACAGTTCAACCACAACCTCAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTCATTTTCAAGATCTGGAGCCGCTTACATCCTCAGACATGGCATTTCTTGAGGGTCTTTAGGACACAAGTGATGAACTACTTAGATAGTCTGGGTGTGATTTCAATTAATAATGTAATTAGAGCAGTTGATCATGTATTGTATAATAGATTACAAGGAACATTGTATGTACGGACATTTCATGATATAAAATATAAAATTTATTAA |
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Protein Sequence
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MDSRTGILITAAQAQNGEYIWRVPNPLYFKITRHNQRSFNRDQDVITIQIQFNHNLRSQLGLHKCFLIFKIWSRLHPQTWHFLRVFRTQVMNYLDSLGVISINNVIRAVDHVLYNRLQGTLYVRTFHDIKYKIY |
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NCBI Accession
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NP_619556.1
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Location
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1371-1781 |
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Gene Name
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C2 |
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Protein Name
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transcriptional transactivator protein |
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Coding Region
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ATGCAACCTTCGTCACCCTCTACAGCCCACTCTATTCAGGTTCCCATCAAAGTCCAGCACAGGATAGCCAAATCGAAGAAGAAGAACCGCAGGAGGAGGATTGATCTAAACTGCGGGTGTTCTATCTTCGTGGGACTTGACTGTGCAAACTATGGATTCACGCACAGGGATACTCATCACTGCAGCTCAGGCACAGAATGGAGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATTACGAGGCACAATCAACGATCATTCAACAGGGACCAAGACGTAATAACAATACAGATACAGTTCAACCACAACCTCAGATCCCAGCTGGGTTTGCACAAGTGTTTCCTCATTTTCAAGATCTGGAGCCGCTTACATCCTCAGACATGGCATTTCTTGAGGGTCTTTAG |
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Protein Sequence
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MQPSSPSTAHSIQVPIKVQHRIAKSKKKNRRRRIDLNCGCSIFVGLDCANYGFTHRDTHHCSSGTEWRVYLEGSKSPLFQDYEAQSTIIQQGPRRNNNTDTVQPQPQIPAGFAQVFPHFQDLEPLTSSDMAFLEGL |
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NCBI Accession
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NP_619557.1
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Location
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1678-2766 |
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Gene Name
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C1 |
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Protein Name
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replication-associated protein |
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Coding Region
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ATGCCTGCCCCAAATCGTTTTAAAATAAATGCAAAGAATTATTTCCTCACATACCCACACTGCTCTCTTACTAAAGGAGAAGCACTCTCACAAATCAAGCAACTCCAAACACCGATATCAAAAAAATTCATAAGAATCTGCCGTGAATTACATGAAGATGGGAGCCCTCATCTCCACATCCTCATCCAATTCGAAGGAAAATACCAATGCAAAAATCAACGATTCTTCGACCTCGTATCCCCAAGTAGGTCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGTCCTACATGGAGAAAGACGGAGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGGGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCAAAGTCATCGGCACTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATTCAAATTTAGATAGGATTTTTGCTCCTCCATTGGAGGTTTTTGTTTGTCCTTTTTCTAGTTCTTCATTTGATCAAGTTCCTGAAGAACTTGAGGAATGGGCTGCAGAAAACGTGAAGTCTTCTGCGCGGCCATGGAGACCGATTAGTATTGTCATAGAGGGTGACAGTAGGACAGGAAAAACGATGTGGGCTAGGTCGTTAGGTCCACATAACTACCTATGCGGTCATCTGGATCTGAGTCCGAAGATCTACAGCAACGACGCATGGTACAACGTCGTTGATGATGTAGACCCCCACTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAGCCAATTCAAATTAAAGGTGGAATCCCAACAATCTTCCTCTGCAATCCAGGTCCAACGTCTTCATATACGGAATTTCTGGACGAAGAAAAGAATTCCGCATTAAAAGCCTGGGCAGTTAAAAATGCAACCTTCGTCACCCTCTACAGCCCACTCTATTCAGGTTCCCATCAAAGTCCAGCACAGGATAGCCAAATCGAAGAAGAAGAACCGCAGGAGGAGGATTGA |
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Protein Sequence
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MPAPNRFKINAKNYFLTYPHCSLTKGEALSQIKQLQTPISKKFIRICRELHEDGSPHLHILIQFEGKYQCKNQRFFDLVSPSRSAHFHPNIQAAKSSSDVKSYMEKDGDILDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDFVLQFHNLNSNLDRIFAPPLEVFVCPFSSSSFDQVPEELEEWAAENVKSSARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEFLDEEKNSALKAWAVKNATFVTLYSPLYSGSHQSPAQDSQIEEEEPQEED |
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NCBI Accession
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NP_619558.1
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Location
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2316-2615 |
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Gene Name
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C4 |
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Protein Name
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hypothetical protein |
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Coding Region
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ATGAAGATGGGAGCCCTCATCTCCACATCCTCATCCAATTCGAAGGAAAATACCAATGCAAAAATCAACGATTCTTCGACCTCGTATCCCCAAGTAGGTCAGCACATTTCCATCCGAACATTCAGGCGGCTAAAAGCTCGTCAGATGTCAAGTCCTACATGGAGAAAGACGGAGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGGGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGATCAAAGTCATCGGCACTCAATATATTAA |
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Protein Sequence
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MKMGALISTSSSNSKENTNAKINDSSTSYPQVGQHISIRTFRRLKARQMSSPTWRKTETSLILEFSKSMEDQLGEVANLPTTHMPRQSTQDQSHRHSIY |