Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000845125.1 |
Isolate | Tanzania: Zanzibar, Uguja Island |
Release date | 2015/2/12 |
Submitter | Maruthi,M.N., Seal,S., Colvin,J., Briddon,R.W., Bull,S.E., Seal,S.E. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_808883.1 |
---|---|
Location | 174-530 |
Gene Name | AV2 |
Protein Name | precoat protein |
Coding Region | ATGTGGGATCCATTGTTAAACGATTTCCCTGAAACCGTTCACGGTTTCCGTTCCATGCTTGCTGTTAAATACCTGTTACATCTTGAACAGGAATACGATCGCGGTACTGTCGGGGCTGAGTATATACGGGATCTAATAGGGGTTCTACGGTGTAAGAGTTATGTCGAAGCGACCAGGAGATATAATAATCTCAACACCCGTATCCAAGGTGCGGAGGAGGCTGAACTTCGACAGCCCATACACGAACCGTGTTGTTGCCCCCACTGTCCGCGTCACCAGAAGCAAAATATGGGCCAACAGGCCCATGTATCGGAAGCCCAAGATGTACAGACTGTATCGAAGCCCAGATGTTCCTAA |
Protein Sequence | MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDLIGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVSEAQDVQTVSKPRCS |
NCBI Accession | NP_808884.1 |
---|---|
Location | 334-1107 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGGAGATATAATAATCTCAACACCCGTATCCAAGGTGCGGAGGAGGCTGAACTTCGACAGCCCATACACGAACCGTGTTGTTGCCCCCACTGTCCGCGTCACCAGAAGCAAAATATGGGCCAACAGGCCCATGTATCGGAAGCCCAAGATGTACAGACTGTATCGAAGCCCAGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTTCAGTCGTATGAACAGAGGGATGATGTTAAGCACACTGGTATGGTTCGATGTGTCAGTGATGTTACGCGTGGGCCAGGCATTACCCATAGAGTCGGGAAGAGGTTCTGTGTGAAGTCCATATATATATTGGGCAAGATCTGGATGGATGAGAATATCAAGAAGCAAAATCATACGAACCATGTTATGTTCTTCCTCGTTCGAGATAGAAGGCCTTATGGGCCGAGTCCTCAAGATTTTGGACAAGTGTTCAACATGTTTGATAATGAACCGACTACGGCAACCGTGAAGAATGATCTTAGGGACCGGTATCAGGTGTTACGTAAATTCTATGCAACTGTTGTTGGTGGACCCTCTGGGATGAAGGAACAAGCGCTGGTTAAGAGGTTTTTTAAGATCAATAATCATGTAGTGTATAATCATCAGGAACAGGCCAAGTATGAGAATCATACTGAGAATGCGTTGTTATTGTATATGGCATGTACACATGCCTCGAATCCTGTGTACGCTACGCTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWANRPMYRKPKMYRLYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGPGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNEPTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFKINNHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
NCBI Accession | NP_808885.1 |
---|---|
Location | 1104-1508 |
Gene Name | AC3 |
Protein Name | hypothetical protein |
Coding Region | ATGGATTCTCGCACAGGGGAACTCATCACTGCGCCTCAAGCCAAGAATGGCGTTTTTACCTGGGAAATAACAAATCCCCTCTATTTCGAAATCACCAACCACGACAGGAGGCCAGGGAACATGAACCACGACATCATCACACTCCAGATACGGTTCAACCACAACCTGAGGAAGGCGCTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGAGTATTTAAATATCAGGTGCTCAAGTATTTAGATATGATAGGCGTTATTTCCATTAACACTGTACTTCAAGCTGTTGCTCATGTTCTGTACAATGTATTACTAAACACACTCCAAGTTACGGAGCAACATGCAATAAAATTCAACCTTTATTAA |
Protein Sequence | MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDRRPGNMNHDIITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGLFLRVFKYQVLKYLDMIGVISINTVLQAVAHVLYNVLLNTLQVTEQHAIKFNLY |
NCBI Accession | NP_808886.1 |
---|---|
Location | 1249-1656 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCCACCTTCATCACCCTCCACGAGCCATTGTTCTCTAGTGCCCATCAAAGTCCAACACCGCACAGCGAAGACCAGGGCCGTCAGACGTAGGCGGGTAGACCTCGAATGCGGCTGCTCGTTCTATCTCCATATCGACTGCATCAACCATGGATTCTCGCACAGGGGAACTCATCACTGCGCCTCAAGCCAAGAATGGCGTTTTTACCTGGGAAATAACAAATCCCCTCTATTTCGAAATCACCAACCACGACAGGAGGCCAGGGAACATGAACCACGACATCATCACACTCCAGATACGGTTCAACCACAACCTGAGGAAGGCGCTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGAGTATTTAA |
Protein Sequence | MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHIDCINHGFSHRGTHHCASSQEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQPEEGAGDSQMFSQLQGLDDLTASDWSFLKSI |
NCBI Accession | NP_808887.1 |
---|---|
Location | 1565-2644 |
Gene Name | AC1 |
Protein Name | replication protein |
Coding Region | ATGACTCCCCCCAAGCGTTTTAAAATACAGGCCAAAAACTATTTTCTCACATATCCCAAATGTTCTCTATCTAAACACGAAGCATTATCCCAAATATTAAACATCCCAACTCCCACAAACAAGAAATACATCAAAGTTTGCCGAGAACTTCACGATGATGGGCAACCTCATCTCCACATGCTTATTCAGTTCGAAGGCAAATTCTCATGCACAAATAAGCGATTCTTCGACCTGGTATCCCCAACACGATCAACACATTTCCATCCGAACATTCAAGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAAGATGGGGATACCACTGAGTGGGGCGAATTCCAGATCGACGCCAGATCGGCTAGAGGCGGCTGCCACAATGCTAATGACGCATGTGCCGAAGCATTAAACTCAGGTTCCAAGGCAGCAGCACTTCTAATTATTAAGGAGAAACTCCCAAAAGAATTTATTTTTCAATATCATAACTTAAGTAGTAATTTAGATAGGATTTTTCAAGAGCCACCAGCTCCTTATGTTTCTCCTTTTCTGTCTTCTTCTTTTACTAACGTTCCTGAGGAACTTGAAGTCTGGGTTTCCGAGAACGTGATGGGTTCCGCTGCGCGGCCATGGAGACCTAATAGTATCGTCATCGAGGGCGATAGTAGGACCGGAAAGACAATGTGGGCCCGCTCTCTGGGTCCACACAACTACTTATGTGGACACCTGGATCTCAGTCCAAAGGTCTACAGCAACGACGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTCAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAATACAAAGTACGGGAAGCCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCATCATATAAAGAGTTTCTGGACGAGGAAAAGAACCAGTCCCTTAAAGCCTGGGCTTTAAAGAATGCCACCTTCATCACCCTCCACGAGCCATTGTTCTCTAGTGCCCATCAAAGTCCAACACCGCACAGCGAAGACCAGGGCCGTCAGACGTAG |
Protein Sequence | MTPPKRFKIQAKNYFLTYPKCSLSKHEALSQILNIPTPTNKKYIKVCRELHDDGQPHLHMLIQFEGKFSCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDTTEWGEFQIDARSARGGCHNANDACAEALNSGSKAAALLIIKEKLPKEFIFQYHNLSSNLDRIFQEPPAPYVSPFLSSSFTNVPEELEVWVSENVMGSAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPLFSSAHQSPTPHSEDQGRQT |
NCBI Accession | NP_808888.1 |
---|---|
Location | 2230-2487 |
Gene Name | AC4 |
Protein Name | hypothetical protein |
Coding Region | ATGGGCAACCTCATCTCCACATGCTTATTCAGTTCGAAGGCAAATTCTCATGCACAAATAAGCGATTCTTCGACCTGGTATCCCCAACACGATCAACACATTTCCATCCGAACATTCAAGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAAGATGGGGATACCACTGAGTGGGGCGAATTCCAGATCGACGCCAGATCGGCTAGAGGCGGCTGCCACAATGCTAATGACGCATGTGCCGAAGCATTAA |
Protein Sequence | MGNLISTCLFSSKANSHAQISDSSTWYPQHDQHISIRTFKELNPAPTSSPTSTKMGIPLSGANSRSTPDRLEAAATMLMTHVPKH |
NCBI Accession | NP_808889.1 |
---|---|
Location | 361-1137 |
Gene Name | BV1 |
Protein Name | movement protein |
Coding Region | ATGTATTCTGTATACAGACGTGGGTATAAGACGCCGTATAGGAGTCCGTATGGCTCGCGTGTAACACCATATGTGAATCGTAAGACCGCTGTGAAACAGACGGCGAAATCTCGTGTATCGCGAAAGTTGGCGTATGAATCGCCAAAAGGTCTATATACGCGACGCTCATTGGAGGATATCCATAATGGGGCTTCCTTGAAGTTGCCTCAACAGGGGGATTATACGTCCTACGTGACACTCCCATGTCGAGGCATCGATGGTAATGGGGGTAGGTCTGTTGATCATATAAAATTATTAAGCTTGAGGGTTTCTGGGACCGTCAACATCAGTCAATCCGGTGGTGATGACAATATGGGAGAGAGAACGACCATGAGGGGTATTTTTTTCATGGTTTGTTTTGTTGATAAGAAACCTTTCGTTCCAGAGGGGGTCAGCATATTGCCGACGTTCAATGAGTTGTTTGGGGAATATGAATCCGTGTATGGCATGCCTAGGCTGAAGGAAAACGTCCGTCACCGTTATCGTGTTATTGGGACGTCGAAATTATATATAACGACCGATGAAGATCATATCCAGAAGCCTTTTAGTCTACGTCGAAGACTAAGTGGAGGGAAATATCCTATATGGTCGTCGTTCAAGGATGTGGATAATAGTAGTACAGGTGGTAACTATAAAAATATAAATAAGAACGCTATACTCGTTAGTTATGTGTGGGTTTCGCTATGTCGGACCACGTGTGATGTGTATTCGCAGTTTGTACTTAATTACGTCGGCTGA |
Protein Sequence | MYSVYRRGYKTPYRSPYGSRVTPYVNRKTAVKQTAKSRVSRKLAYESPKGLYTRRSLEDIHNGASLKLPQQGDYTSYVTLPCRGIDGNGGRSVDHIKLLSLRVSGTVNISQSGGDDNMGERTTMRGIFFMVCFVDKKPFVPEGVSILPTFNELFGEYESVYGMPRLKENVRHRYRVIGTSKLYITTDEDHIQKPFSLRRRLSGGKYPIWSSFKDVDNSSTGGNYKNINKNAILVSYVWVSLCRTTCDVYSQFVLNYVG |
NCBI Accession | NP_808890.1 |
---|---|
Location | 1269-2192 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGACCACCAATTCACCGTCACAGACAATAATTACATCAACAGCAAACGCACAGAGTACGCATTAACCAACGGTGCTGCACCAATCAATCTCCAATTTCCGAGCTCATTCGAGCAGGCGACCATGCGACTCAAAGGCCGATGTATGAAAATCGACCACATTATAATTGAATACCGCAACCAGGTCCCATTTAACGCAACTGGGTCGGTTATCGTAGAAATCAGAGACAATCGCGTCAGCCTTGAAGACGCAGCTCAGGCAGCATTCACTTTCCCCATAGCTTGCAACGTAGACCTCCACTACTTCTCTTCTACATATTTCTCGATTTCAGAACCCTCCCCTTGGAAAATCCTATACAGAGTCGAAGACTCAAACGTCATAGAAGGCGTGAAATTCGCATCCATCAAGGCCAAGCTCAGATTATCCTCGGCCAAACATTCCACGGACATACGTTTCAAACCCCCAACAATTAACATCTTATCCAAGGGATACACAAAAGACTGCATAGACTTCTGGTCCGTGGAAAAAGGAGAAACAAGACGGAGATTACTAAATCCAACTCCAACTGCTCATAGTCAACGACCCATAACCCACAGGCCCATCACCATCCTACCTGGAGAAACATGGGCCACAAAGTCTCAGATTGGGCTACCAAGCTCATCCGGCCCAGCAAGGCTGGAACACTTTCGTTCACAGTCCATGAGAATGGACCCATCGACAACACCAACAGACTTAGACAACGAGTCCACCGAATATCCTTACCAGAGACTACACAGATTAAACACACCAGAGTTAGACCCAGGAGACTCGGTATCACAGACCCAATCCGACTCCGTATCCAGAAAGGATCTCGAGACACTGCTTGAGAGTACCATTAACAGGTGCCTCATCAAGATCAAATCCGAAGCACCAAGGCCATTGTAA |
Protein Sequence | MDHQFTVTDNNYINSKRTEYALTNGAAPINLQFPSSFEQATMRLKGRCMKIDHIIIEYRNQVPFNATGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYFSSTYFSISEPSPWKILYRVEDSNVIEGVKFASIKAKLRLSSAKHSTDIRFKPPTINILSKGYTKDCIDFWSVEKGETRRRLLNPTPTAHSQRPITHRPITILPGETWATKSQIGLPSSSGPARLEHFRSQSMRMDPSTTPTDLDNESTEYPYQRLHRLNTPELDPGDSVSQTQSDSVSRKDLETLLESTINRCLIKIKSEAPRPL |
1 |
Maruthi MN, et al. Arch Virol. 2004 Dec;149(12):2365-77. doi: 10.1007/s00705-004-0380-1. Epub 2004 Sep 10. PMID: 15375675 |
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2 |
Khan AJ, et al. Virus Genes. 2013 Feb;46(1):195-8. doi: 10.1007/s11262-012-0838-2. Epub 2012 Oct 20. PMID: 23085885 |
3 |
Kidulile CE, et al. J Phytopathol (1986). 2018 Oct;166(10):739-745. doi: 10.1111/jph.12725. Epub 2018 Aug 12. PMID: 31031544 |
4 |
First Report of the Presence of East African Cassava Mosaic Virus in Cameroon. Fondong VN, et al. Plant Dis. 1998 Oct;82(10):1172. doi: 10.1094/PDIS.1998.82.10.1172B. PMID: 30856787 |
5 |
First Report of East African Cassava Mosaic Begomovirus in Nigeria. Ogbe FO, et al. Plant Dis. 1999 Apr;83(4):398. doi: 10.1094/PDIS.1999.83.4.398A. PMID: 30845599 |
6 |
Tairo F, et al. Afr J Biotechnol. 2017;16(36). doi: 10.5897/AJB2017.16130. Epub 2017 Sep 6. PMID: 33281889 |
7 |
Cassava brown streak disease: historical timeline, current knowledge and future prospects. Tomlinson KR, et al. Mol Plant Pathol. 2018 May;19(5):1282-1294. doi: 10.1111/mpp.12613. Epub 2017 Dec 28. PMID: 28887856 |
8 |
Cassava begomovirus species diversity changes during plant vegetative cycles. Dye AE, et al. Front Microbiol. 2023 May 25;14:1163566. doi: 10.3389/fmicb.2023.1163566. eCollection 2023. PMID: 37303798 |
9 |
Zhou X, et al. J Gen Virol. 1998 Nov;79 ( Pt 11):2835-40. doi: 10.1099/0022-1317-79-11-2835. PMID: 9820161 |
10 |
A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus. Harimalala M, et al. Arch Virol. 2012 Oct;157(10):2027-30. doi: 10.1007/s00705-012-1399-3. Epub 2012 Jul 10. PMID: 22777180 |