Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000859785.1 |
Isolate | Uganda |
Release date | 2015/2/13 |
Submitter | Pita,J.S., Fondong,V.N., Sangare,A., Otim-Nape,G.W., Ogwal,S., Fauquet,C.M., Beachy,R.N. |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_817128.1 |
---|---|
Location | 358-1134 |
Gene Name | BV1 |
Protein Name | BV1 protein |
Coding Region | ATGTATTCTGTTTACAGGCGTGGGTATAAGACGCCGTATAGGAGTTCGTATGGCGCTCGTGTAACACCATATGTTTATCGTAAGACGGCTGGTAAACAGACGTCTAAATCTCGTGTACCGCGAAAGTTGGCGTATGAATCGCCAAAATGTCTATATACGCGACGCTCATTGGAGGATATCCATAATGGGGCTTCCTTAAAGTTGCCTCAACAGGGGGATTATACGTCCTACGTGACACTCCCATGTCGAGGTATCGATGGTAATGGGGGTAGGTCTGTTGATCATATAAAATTATTAAGCTTGAGGGTGTCTGGGACCGTCAATATCAGTCAATGCGGTGGTGATGATAATATGGGAGAGAGAACGACCATGAGGGGTATTTTTTTCATGGCTTGTCTTGTTGATAAGAAACCTTTCGTTCCAGAGGGGGTTAGTATATTGCCGACGTTTAATGAGTTGTTCGGGGAATATGAATCCGTGTATGGCATGCCTAGGTTGAAGGAAAACGTTCGTCACCGTTATCGCGTGATTGGGACGTCGAAATTATATATAACGACCGATGAAGAGCACATCCAGAAGCCATTTAGTCTACGTCGAAGACTAAGTGGAGGGAAATATCCTATGTGGTCGTCGTTCAAGGATGTGGATAATAGTAGTACAGGTGGGAACTATAAAAATATAAATAAGAACGCTATACTAGTTAGTTATGTGTGGGTATCGCTATGTCGGTCCACGTGTGATGTGTATTCCCAGTTTGTACTTAATTACGTCGGTTGA |
Protein Sequence | MYSVYRRGYKTPYRSSYGARVTPYVYRKTAGKQTSKSRVPRKLAYESPKCLYTRRSLEDIHNGASLKLPQQGDYTSYVTLPCRGIDGNGGRSVDHIKLLSLRVSGTVNISQCGGDDNMGERTTMRGIFFMACLVDKKPFVPEGVSILPTFNELFGEYESVYGMPRLKENVRHRYRVIGTSKLYITTDEEHIQKPFSLRRRLSGGKYPMWSSFKDVDNSSTGGNYKNINKNAILVSYVWVSLCRSTCDVYSQFVLNYVG |
NCBI Accession | NP_817129.1 |
---|---|
Location | 1264-2187 |
Gene Name | BC1 |
Protein Name | BC1 protein |
Coding Region | ATGGACAACCAATTCACCGTCACAGACAAGAATTACATCAACAGCAAACGCACAGAGTACGCATTAACCAACGATGCTGCACCAATCAATCTCCAATTCCCGAGCTCATTCGAGCAGGCTACCATGCGACTCAAAGGCCGATGTATGAAAATCGACCACATTATAATTGAATACCGAAACCAGGTCCCATTTAACGCAATTGGGTCGGTTATCGTAGAAATCAGAGACAATCGCGTCAGCCTTGAAGACGCTGCTCAAGCAGCATTCACTTTCCCAATAGCTTGCAACGTAGACCTCCACTACTTCTCGTCTACATATTTTTCGCTTTCAGAACCCTCCCCTTGGAGAATCATGTACAGAGTCGAAGACTCAAACGTCATAGAAGGCGTGAAATTCGCATCCATCAAGGCCAAGCTCCGATTATCATCGGCCAAACATTCCACGGACATACGTTTCAAACCCCCAACAATTAACATATTATCCAAGGGCTACACAAAGGATTGCATAGACTTCTGGTCCGTGGAAAAAGGAGAAACACGACGGAGATTACTAAATCCAACTCCACATGCTAATAGTCAACGACCCATAACCCACAGGCCCATCACCATTCTCCCTGGAGAAACATGGGCCACGAAGTCTCAAATTGGGCTACCCAGCTCATCCGGCCCAGCAAGGCTGGACCACTTTCGTTCACAGTCCATGAGAATGGGCCCATCGACAACCACAACGGACTTCGACAACGACTCCACAGAATATCCTTACCAGACACTACACAGATTACACACACCCGAATTGGACCCAGGGGACTCGGTATCACAGACCCCATCCGACTCAGTATCCCGAAAGGACCTCGAGACACTGCTTGAGAGTACCATAAACAAGTGTCTCATCAAAATAAAATCCGAAGCACCCAGGCAATTGTAA |
Protein Sequence | MDNQFTVTDKNYINSKRTEYALTNDAAPINLQFPSSFEQATMRLKGRCMKIDHIIIEYRNQVPFNAIGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYFSSTYFSLSEPSPWRIMYRVEDSNVIEGVKFASIKAKLRLSSAKHSTDIRFKPPTINILSKGYTKDCIDFWSVEKGETRRRLLNPTPHANSQRPITHRPITILPGETWATKSQIGLPSSSGPARLDHFRSQSMRMGPSTTTTDFDNDSTEYPYQTLHRLHTPELDPGDSVSQTPSDSVSRKDLETLLESTINKCLIKIKSEAPRQL |
NCBI Accession | NP_817107.1 |
---|---|
Location | 172-528 |
Gene Name | AV2 |
Protein Name | AV2 protein |
Coding Region | ATGTGGGATCCATTGGTGAACGATTTTCCCGAAACCGTTCACGGTTTCCGTTCTATGCTTGCTGTTAAATACCTGTTACATTTGGAACAGGAATACGATCGCGGTACTGTCGGGGCTGAGTATATACGGGATCTAATAGGGGTTCTACGGTGTAAGAATTATGTCGAAGCGACCAGGAGATATAATAATCTCAACACCCGTATCCAAGGTGCGGAGGAGGCTGAACTTCGACAGCCCATACACGAACCGTGTTGTTGCCCCCACTGTCCGCGTCACCAGAAGCAAAATATGGGCCAACAGGCCCATGTATCGGAAACCCAAGATGTACAGAATGTATCGAAGCCCAGATGTCCCTAA |
Protein Sequence | MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDLIGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVSETQDVQNVSKPRCP |
NCBI Accession | NP_817108.1 |
---|---|
Location | 332-1105 |
Gene Name | AV1 |
Protein Name | AV1 protein |
Coding Region | ATGTCGAAGCGACCAGGAGATATAATAATCTCAACACCCGTATCCAAGGTGCGGAGGAGGCTGAACTTCGACAGCCCATACACGAACCGTGTTGTTGCCCCCACTGTCCGCGTCACCAGAAGCAAAATATGGGCCAACAGGCCCATGTATCGGAAACCCAAGATGTACAGAATGTATCGAAGCCCAGATGTCCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGCAGAGGGATGATGTGAAGCACCTTGGTATCTGTAAGGTGATTAGTGATGTGACGCGTGGGCCTGGGCTGACACACAGGGTCGGAAAGAGGTTTTGTATCAAGTCCATTTACATTCTTGGTAAGATCTGGATGGATGAAAATATTAAGAAGCAGAATCACACTAATAATGTGATGTTTTACCTGCTTAGGGATAGAAGGCCGTATGGCAATGCGCCCCAAGACTTTGGGCAGATATTTAACATGTTTGATAATGAGCCCAGTACTGCAACAATTAAGAACGATTTGAGGGATAGGTTTCAGGTGTTGAGGAAATTTCATGCCACTGTTGTTGGTGGTCCATCTGGCATGAAGGAGCAGGCGTTGGTGAAAAGGTTTTACAAGCTGAATCATCACGTGACATATAATCATCAGGAGGCAGGGAAGTATGAGAATCACACAGAGAATGCGTTGTTATTGTATATGGCATGTACACATGCCTCGAATCCTGTGTATGCTACGCTGAAAATACGCATCTATTTTTATGATGCAGTGACAAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWANRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHRVGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNEPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
NCBI Accession | NP_817109.1 |
---|---|
Location | 362-973 |
Gene Name | ac5 |
Protein Name | AC5 protein |
Coding Region | ATGATTATATGTCACGTGATGATTCAGCTTGTAAAACCTTTTCACCAACGCCTGCTCCTTCATGCCAGATGGACCACCAACAACAGTGGCATGAAATTTCCTCAACACCTGAAACCTATCCCTCAAATCGTTCTTAATTGTTGCAGTACTGGGCTCATTATCAAACATGTTAAATATCTGCCCAAAGTCTTGGGGCGCATTGCCATACGGCCTTCTATCCCTAAGCAGGTAAAACATCACATTATTAGTGTGATTCTGCTTCTTAATATTTTCATCCATCCAGATCTTACCAAGAATGTAAATGGACTTGATACAAAACCTCTTTCCGACCCTGTGTGTCAGCCCAGGCCCACGCGTCACATCACTAATCACCTTACAGATACCAAGGTGCTTCACATCATCCCTCTGCTCAAAAGACTGGACCTTACATGGGCCTTCACAGCCCTTAGGGACATCTGGGCTTCGATACATTCTGTACATCTTGGGTTTCCGATACATGGGCCTGTTGGCCCATATTTTGCTTCTGGTGACGCGGACAGTGGGGGCAACAACACGGTTCGTGTATGGGCTGTCGAAGTTCAGCCTCCTCCGCACCTTGGATACGGGTGTTGA |
Protein Sequence | MIICHVMIQLVKPFHQRLLLHARWTTNNSGMKFPQHLKPIPQIVLNCCSTGLIIKHVKYLPKVLGRIAIRPSIPKQVKHHIISVILLLNIFIHPDLTKNVNGLDTKPLSDPVCQPRPTRHITNHLTDTKVLHIIPLLKRLDLTWAFTALRDIWASIHSVHLGFPIHGPVGPYFASGDADSGGNNTVRVWAVEVQPPPHLGYGC |
NCBI Accession | NP_817110.1 |
---|---|
Location | 1102-1506 |
Gene Name | ac3 |
Protein Name | AC3 protein |
Coding Region | ATGGATTCTCGCACAGGGGAACTCATCACTGCGCCTCAAGCAAGGAATGGCGTTTTTACCTGGGACATAACAAATCCCCTCTATTTCGAAATCACCGACCACGACAAGAGGCCAGGGAACATGAACCACGACATCATCACACTCCAGATACGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTGCTCAAGTATTTAGATATGATAGGCGTTATTTCCATTAACACTGTCCTTCAAGCTGTTGATCATGTTGTGTACGATGTATTACTAAACACACTCCAAGTTACGGAGCAACATGCAATAAAATTCAACCTTTATTAA |
Protein Sequence | MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDIITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINTVLQAVDHVVYDVLLNTLQVTEQHAIKFNLY |
NCBI Accession | NP_817111.1 |
---|---|
Location | 1247-1654 |
Gene Name | ac2 |
Protein Name | AC2 protein |
Coding Region | ATGCCACCTTCATCGCCCTCCACGAGCCATTGTTCTCAAGTGCCCATCAAAGTCCAACACCGCACAGCGAAGACCAGGGCCGTCAGACGTAGGCGGGTAGACCTCGAATGCGGCTGCTCGTTCTATCTCCATATCGACTGCATCAACCATGGATTCTCGCACAGGGGAACTCATCACTGCGCCTCAAGCAAGGAATGGCGTTTTTACCTGGGACATAACAAATCCCCTCTATTTCGAAATCACCGACCACGACAAGAGGCCAGGGAACATGAACCACGACATCATCACACTCCAGATACGGTTCAACCACAACCTTCGGAAGGCATTGGGGATTCACAAGTGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
Protein Sequence | MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHIDCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQPSEGIGDSQVFSQLQGLDDLTASDWSFLKSI |
NCBI Accession | NP_817112.1 |
---|---|
Location | 1563-2642 |
Gene Name | ac1 |
Protein Name | AC1 protein |
Coding Region | ATGCCAAGAGCCGGTCGTTTTCAAATTAATGCCAAAAATTATTTCATAACCTATCCCCGATGCTCATTAACAAAAGAAGAGGCCCTTTCCCAATTACAAGCCCTTTCGTACCCGACGATTATCAAATTCATTAGGGTTTGCAGAGAACTACATCAGGATGGGGTGCCTCATCTCCATGTTCTCATCCAATTCGAAGGCAAGTTCCAATGTACCAACCCGAGATTCTTCGATCTCATTTCCCCATCCCGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGATGTCAAAGCTTACATTGAAAAGGGAGGGGAATTTCTTGACGCTGGACTTTTCCAAGTCGATGCCAGAAGTGCAAGGGGGGAGGGCCAACATTTAGCTCAGGTATATGCAGACGCGTTGAATGCTTCGTCTAAATCCGAGGCTCTTCAAATTATTAAAGAAAAAGATCCAAAGTCCTTTTTTTTACAGTTCCATAACATATCTGCTAACGCAGATAGAATCTTCCAGGCTCCGCCACAAACTTACGTTAGTCCGTTCTTATCATCATCTTTTACACAAGTCCCAGAAGACATAGAGGTATGGGTATCCGAAAATATATGCAGTCCCGCTGCGCGGCCATGGAGACCGATCAGTATTGTTCTAGAAGGTGATAGCCGAACCGGCAAAACAATGTGGGCTCGTTCACTGGGACCCCATAATTATCTTTGTGGACACCTGGATCTGTCTCCCAAGGTATATTCAAACGACGCATGGTACAACGTCATTGATGACGTCGACCCCCACTACCTCAAACACTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACAAAATACGGGAAGCCAATTCAAATTAAAGGCGGCATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCATCATATAAAGAGTTTCTGGACGAGGAAAAGAACCAATCCCTTAAAGCCTGGGCTTTAAAGAATGCCACCTTCATCGCCCTCCACGAGCCATTGTTCTCAAGTGCCCATCAAAGTCCAACACCGCACAGCGAAGACCAGGGCCGTCAGACGTAG |
Protein Sequence | MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTIIKFIRVCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYIEKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFHNISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFIALHEPLFSSAHQSPTPHSEDQGRQT |
NCBI Accession | NP_817113.1 |
---|---|
Location | 2252-2485 |
Gene Name | ac4 |
Protein Name | AC4 protein |
Coding Region | ATGGGGTGCCTCATCTCCATGTTCTCATCCAATTCGAAGGCAAGTTCCAATGTACCAACCCGAGATTCTTCGATCTCATTTCCCCATCCCGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGATGTCAAAGCTTACATTGAAAAGGGAGGGGAATTTCTTGACGCTGGACTTTTCCAAGTCGATGCCAGAAGTGCAAGGGGGGAGGGCCAACATTTAG |
Protein Sequence | MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHRPMSKLTLKREGNFLTLDFSKSMPEVQGGRANI |
1 |
Eni AO, et al. Ann Appl Biol. 2021 May;178(3):466-479. doi: 10.1111/aab.12647. Epub 2020 Oct 19. PMID: 34219746 |
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2 |
De Bruyn A, et al. BMC Evol Biol. 2012 Nov 27;12:228. doi: 10.1186/1471-2148-12-228. PMID: 23186303 |
3 |
Kidulile CE, et al. J Phytopathol (1986). 2018 Oct;166(10):739-745. doi: 10.1111/jph.12725. Epub 2018 Aug 12. PMID: 31031544 |
4 |
First Report of East African Cassava Mosaic Begomovirus in Ghana. Offei SK, et al. Plant Dis. 1999 Sep;83(9):877. doi: 10.1094/PDIS.1999.83.9.877C. PMID: 30841053 |
5 |
First Report of East African Cassava Mosaic Begomovirus in Nigeria. Ogbe FO, et al. Plant Dis. 1999 Apr;83(4):398. doi: 10.1094/PDIS.1999.83.4.398A. PMID: 30845599 |
6 |
First Report of the Presence of East African Cassava Mosaic Virus in Cameroon. Fondong VN, et al. Plant Dis. 1998 Oct;82(10):1172. doi: 10.1094/PDIS.1998.82.10.1172B. PMID: 30856787 |
7 |
Naseem S, et al. J Virol Methods. 2016 Jan;227:23-32. doi: 10.1016/j.jviromet.2015.10.001. Epub 2015 Oct 8. PMID: 26456453 |
8 |
Khan AJ, et al. Virus Genes. 2013 Feb;46(1):195-8. doi: 10.1007/s11262-012-0838-2. Epub 2012 Oct 20. PMID: 23085885 |
9 |
Alabi OJ, et al. Arch Virol. 2008;153(9):1743-7. doi: 10.1007/s00705-008-0169-8. Epub 2008 Jul 26. PMID: 18661095 |
10 |
Maredza AT, et al. Mol Genet Genomics. 2016 Jun;291(3):1467-85. doi: 10.1007/s00438-015-1049-z. Epub 2015 Apr 29. PMID: 25920485 |